Table 1.
Sample information. For each replicate sample file used in transcriptome analysis, we list the file types available in GEO (Fastq and/or TXT) as well as the corresponding mouse genotype, sex, and cage. We also include the total number of reads for each replicate that was generated using the Illumina HiSeq2500 for sequencing.
| Sample_lane | Raw | Analyzed | Genotype | Sex | Cage | Reads |
|---|---|---|---|---|---|---|
| CB-1_L005 | .fastq.gz | .txt | B6 | M | 11PN7-89 | 22,610,234 |
| CB-1_L006 | .fastq.gz | .txt | B6 | M | 11PN7-89 | 25,543,567 |
| CB-2_L005 | .fastq.gz | .txt | Line 4a | M | 11PN7-87 | 22,157,350 |
| CB-2_L006 | .fastq.gz | .txt | Line 4a | M | 11PN7-87 | 25,262,056 |
| CB-3_L005 | .fastq.gz | .txt | B6 | F | 11PN7-81 | 22,947,115 |
| CB-3_L006 | .fastq.gz | .txt | B6 | F | 11PN7-81 | 25,854,797 |
| CB-4_L005 | .fastq.gz | .txt | Line 4a | F | 11PN7-80 | 18,723,353 |
| CB-4_L006 | .fastq.gz | .txt | Line 4a | F | 11PN7-80 | 21,157,403 |
| CB-5_L005 | .fastq.gz | .txt | B6 | M | 11PN7-89 | 19,515,383 |
| CB-5_L006 | .fastq.gz | .txt | B6 | M | 11PN7-89 | 21,956,561 |
| CB-6_L005 | .fastq.gz | .txt | Line 4a | M | 11PN7-87 | 16,942,883 |
| CB-6_L006 | .fastq.gz | .txt | Line 4a | M | 11PN7-87 | 19,532,150 |
| CB-7_L005 | .fastq.gz | .txt | B6 | F | 11PN7-86 | 22,179,855 |
| CB-7_L006 | .fastq.gz | .txt | B6 | F | 11PN7-86 | 25,134,998 |
| CB-8_L005 | .fastq.gz | .txt | Line 4a | F | 11PN7-90 | 19,457,924 |
| CB-8_L006 | .fastq.gz | .txt | Line 4a | F | 11PN7-90 | 22,174,685 |
| CB-9_L007 | .fastq.gz | .txt | B6 | F | 11PN7-90 | 19,596,836 |
| CB-9_L008 | .fastq.gz | .txt | B6 | F | 11PN7-90 | 21,221,174 |
| CB-10_L007 | .fastq.gz | .txt | Line 4a | M | 11PN7-85 | 21,101,927 |
| CB-10_L008 | .fastq.gz | .txt | Line 4a | M | 11PN7-85 | 22,813,084 |
| CB-11_L007 | .fastq.gz | .txt | B6 | F | 11PN7-90 | 18,491,655 |
| CB-11_L008 | .fastq.gz | .txt | B6 | F | 11PN7-90 | 19,918,292 |
| CB-12_L007 | .fastq.gz | .txt | Line 4a | F | 11PN7-84 | 20,899,297 |
| CB-12_L008 | .fastq.gz | .txt | Line 4a | F | 11PN7-84 | 22,566,381 |
| CB-13_L007 | .fastq.gz | N/A | B6 | M | 11PN7-83 | 25,351,760 |
| CB-13_L008 | .fastq.gz | .txt | B6 | M | 11PN7-83 | 27,435,087 |
| CB-14_L007 | .fastq.gz | .txt | Line 4a | M | 11PN7-82 | 20,096,221 |
| CB-14_L008 | .fastq.gz | .txt | Line 4a | M | 11PN7-82 | 21,735,984 |
| CB-15_L007 | .fastq.gz | .txt | B6 | M | 11PN7-83 | 20,676,230 |
| CB-15_L008 | .fastq.gz | .txt | B6 | M | 11PN7-83 | 22,347,388 |
| CB-16_L007 | .fastq.gz | .txt | Line 4a | M | 11PN7-82 | 22,164,119 |
| CB-16_L008 | .fastq.gz | .txt | Line 4a | M | 11PN7-82 | 23,901,507 |