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. 2015 Dec 23;44(8):e71. doi: 10.1093/nar/gkv1507

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© The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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Figure 6. — Case study n.4 TCGAbiolinks integration: integrative analysis using ELMER. (A) Each scatter plot showing the average DNA methylation level of sites with the AP1 motif in all KIRC samples plotted against the expression of the transcription factor CEBPB and GFI1, respectively. (B) The schematic plot shows probe colored in blue and the location of nearby 20 genes, the genes significantly linked to the probe are in red. (C) The plot shows the Odds Ratio (x axis) for the selected motifs with OR above 1.1 and lower boundary of OR above 1.1. The range shows the 95% confidence interval for each Odds Ratio.