Table 2. Entropic stabilization of folded guanine quadruplexes by G-register exchange.
VEGFA | c-myc Pu18 | PIM1 | |
---|---|---|---|
Number of GR isomers (N) | 2 | 4 | 12 |
ΔΔStheo= Rln(N) J mol−1 K−1a | 5.8 | 11.5 | 20.7 |
ΔΔSexp J mol−1 K−1b | 5.20 ± 0.01 | 6.2 ± 0.9 | 14.3 ± 1.6 |
KF,exch/KF,indivc | 1.8 ± 0.1 | 2.1 ± 0.5 | 4.5 ± 1.9 |
ΔTm°Cd | 3.1 ± 0.3 | 3.4 ± 1.2 | 7.3 ± 1.6 |
Parameters given here are the average of the results from dT and dI trapped mutant data sets where applicable (DSC and UV-Vis for c-myc Pu18, UV-Vis for PIM1).
aMaximum conformational entropy contribution for exchange among N isomers.
bActual conformation entropy contribution calculated using trapped mutant populations at 25°C.
cRatios of wild-type and most-populated trapped mutant folding equilibrium constants evaluated at the wild-type Tm.
dWild-type thermal upshifts relative to the most-populated GR isomer. Errors were calculated as the standard deviations of the values extracted from global fits of DSC and UV-Vis data according to variance/co-variance method (See Supplementary Methods).