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. 2016 May 6;6:25586. doi: 10.1038/srep25586

Table 2. The best partition scheme selected by PartitionFinder for each dataset used in phylogenetic analyses.

Dataset MrBayes RAxML
Partition scheme Model Partition scheme Model
ITS ITS1; ITS2 HKY + G ITS1; ITS2 GTR + G
5.8 S K80 + I 5.8 S GTR + I + G
nrLSU full HKY + I + G Full GTR + I + G
rpb1 codon 1 HKY + I codon 1, 2 GTR + G
codon 2 K80 codon 3 GTR + G
codon 3 HKY    
tef1α codon 1, 2 K80 + I + G codon 1, 2 GTR + I + G
condon 3 HKY + G codon 3 GTR + G
3-gene rpb1_codon 1; tef1α_codon 1 HKY + I + G rpb1_codon 1, 2; tef1α_codon 1, 2 GTR + I + G
tef1α_codon2 JC + I rpb1_codon 3; tef1α_codon 3 GTR + G
rpb1_codon 3; tef1α_codon 3 HKY + G nrLSU GTR + I + G
nrLSU HKY + I + G    
rpb1_codon2 K80