Figure 3.

Estimation of double reduction along the chromosomes obtained from DQuad-M (top panels) and DPrefQuad-M (bottom panels). Each data set has N_O = 200 offspring and N_t = 75 markers. The left panels are from the bvModel, and the right panels are from the fullModel. The solid lines denote the estimations, the posterior probabilities of double-reduction states averaged over the offspring at a given marker; the empty circles denote the true values, the fractions of offspring being in double-reduction states. The dashed lines denote the wrongly assigned probabilities along the chromosomes, one minus the posterior probability of being the true ancestral state, averaged over all offspring but not markers.