Table 3. Comparisons of ancestral inference between TetraOrigin and H2013 for the 14 simulation scenarios (Table 1).
Data set | No = 100, Nt = 75 | No = 100, Nt = 300 | ||||
---|---|---|---|---|---|---|
TetraOrigin (bvModel) | TetraOrigin (fullModel) | H2013 | TetraOrigin (bvModel) | TetraOrigin (fullModel) | H2013 | |
DStd-M | 0.061 | 0.061 | 0.144 | 0.015 | 0.015 | 0.023 |
DPref-M | 0.060 | 0.060 | 0.136 | 0.014 | 0.014 | 0.022 |
DQuad-M | 0.164 | 0.062 | N/A | 0.122 | 0.012 | N/A |
DPrefQuad-M | 0.146 | 0.065 | N/A | 0.101 | 0.013 | N/A |
DStd-01 | 0.157 | 0.157 | 0.329 | 0.038 | 0.038 | 0.053 |
DStd-02 | 0.126 | 0.126 | 0.222 | 0.027 | 0.027 | 0.036 |
DStd-11 | 0.059 | 0.059 | 0.149 | 0.013 | 0.013 | 0.022 |
DStd-12 | 0.043 | 0.043 | 0.114 | 0.011 | 0.011 | 0.018 |
DStd-13 | 0.060 | 0.060 | 0.158 | 0.014 | 0.014 | 0.023 |
DStd-22 | 0.042 | 0.043 | 0.098 | 0.008 | 0.008 | 0.016 |
DStd-M-V0.25 | 0.064 | 0.064 | 0.148 | 0.014 | 0.014 | 0.021 |
DStd-M-V1 | 0.067 | 0.067 | 0.155 | 0.015 | 0.015 | 0.025 |
DStd-M-Local | 0.100 | 0.101 | 0.171 | 0.020 | 0.020 | 0.026 |
DStd-M-Long | 0.222 | 0.229 | 0.287 | 0.097 | 0.107 | 0.066 |
For each scenario, two sub–data sets are specified by the number No = 100 offspring and the number Nt = 75 or 300 markers. Each cell gives the wrongly assigned probability conditional on the true parental haplotypes. The DQuad-M and DPrefQuad-M data sets could not be analyzed with H2013.