Table 2. Hard-sweep selection signatures associated with significant differentiation signals.

	Hard-sweep region			hapFLK
BTA	Start	End	Population	Start	End	P-value	Candidate genes
6	71.439	71.558	F	70.332	71.607	$1.2{10}^{-12}$	KIT
18	14.755	14.963	F	14.305	14.872	$2.1{10}^{-8}$	MC1R
14	24.805	25.076	H, A	24.937	25.070	$2.2{10}^{-7}$	PLAG1
10	5.736	5.843	A	5.736	5.782	$4.9{10}^{-6}$	Intergenic
13	64.149	64.197	A	63.879	64.546	$2.0{10}^{-5}$	ASIP
20	22.923	23.203	J	23.110	23.125	$4.2{10}^{-5}$	ANKRD55
7	43.436	43.542	A, J	43.473	43.474	$7.0{10}^{-5}$	OR cluster
24	14.006	14.040	F	14.021	14.023	$8.2{10}^{-5}$	Intergenic

Signatures are ordered by decreasing hapFLK P-values. Region coordinates are expressed in megabases on assembly UMD 3.1. Population abbreviations: A, Angus; F, Fleckvieh; H, Holstein; J, Jersey.