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. 2016 Mar 1;291(19):10104–10118. doi: 10.1074/jbc.M115.712448

TABLE 4.

φ and ψ torsion angles for CDR H2 residues as part of the motif Xaa-Xaa-Gly-Gly-(Ser/Thr/Gly)

Angles are averaged in cases with multiple molecules in the asymmetric unit. Numbers 52–56 refer to the Kabat numbering scheme of CDR H2 residues, and italicized numerals refer to the position of the residue in a β-turn.

CDR H2 residue dihedral angles (°)
Antibody Primary sequence Resolution Turn type PDB code
52 or 52A, 0 52A or 53, +1 53 or 54, +2 54 or 55, +3 55 or 56
Å
φ ψ φ ψ φ ψ φ ψ φ ψ
−71.9 163.0 −32.5 −63.4 −93.4 2.31 86.5 10.5 −67.8 −31.0 S55-3 SNGGS 1.95 IVa 4DQ9
−71.0 167.2 −54.2 −36.4 −100.4 −7.86 91.7 1.64 −80.6 −12.2 S55-5 SRGGS 1.94 I 5DQD
−72.5 168.6 −60.7 −36.3 −88.2 −10.0 78.6 −1.78 −68.0 −37.7 LPT-3 GGGSS 2.69 I 4C83
−79.7 172.0 −57.6 −39.4 −79.1 −4.48 95.5 −8.60 −65.9 155.7 S25-26 WSGGS 1.95 I 4M7J
−62.4 155.8 −62.4 −41.1 −60.6 −47.1 111.7 −19.0 −73.6 −10.3 A10F9 Fab SSGGS 3.20 III 3VRL
−64.5 155.3 −61.3 −28.0 −98.4 −5.47 90.7 −26.7 −62.2 −41.6 17/9 Fab SNGGG 2.90 I 1HIM
−71.5 151.3 −51.5 −32.3 −90.2 −8.04 82.2 8.61 −96.8 −5.02 mAb8 Fab SSGGS 2.85 I 4HZL
−67.8 169.3 −55.9 −42.3 −91.2 0.99 83.2 −0.04 −67.9 −28.6 Anti-parathyroid hormone-related protein SSGGS 2.00 I 3FFD
−72.1 168.1 −53.2 −32.9 −118.0 16.7 71.8 15.6 −65.8 −33.3 Thr(P)-231/Ser(P)-235 TSRGGb 1.90 I 4GLR
−76.6 168.0 −53.5 −35.3 −80.6 −13.0 80.5 12.9 −103.3 −40.5 pSAb ATGGH(T)c 1.75 I 4JFZ
−79.7 151.3 −62.4 −63.4 −118.0 −47.1 71.8 −26.7 −100.3 −41.6 Minimum
−62.4 172.0 −32.5 −28.0 −60.6 16.7 111.7 15.6 −62.2 155.7 Maximum
17.3 20.7 29.9 35.4 57.4 63.8 39.9 42.3 38.1 65.9 Difference

a Turns that do not fall into any known classes are grouped under the miscellaneous type IV class.

b Outlier in terms of the motif sequence involved in binding to negative charge.

c The β-turn starts at the alanine residue, but this residue is not involved in recognition of the anion.