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. 2016 May 6;7:10. doi: 10.1186/s13100-016-0066-8

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© Markopoulos et al. 2016

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 6 — Molecular phylogenetic analysis of full-length VL30 LTRs by the Maximum Likelihood method. The bootstrap consensus tree representing the phylogeny of LTRs from 86 full-length and 6 known VL30s is presented (500 tests). The percentage of replicate trees in which the associated taxa clustered together is shown above the branches. The tree is drawn to scale, with branch lengths measured in the number of substitutions per site. Bootstrap replicates denote known elements or elements with identical 5′ and 3′ LTRs. The respective tRNA species used by each VL30 element is shown in parenthesis. Asterisk denotes solo LTR sequences