Table 3.
Imprinted genes | ||||||||||||||||||
CpG sites | MEG3-IG | MEG3 | PEG1/MEST | IGF2 | H19 | GRB10 | ||||||||||||
% | SE | p | % | SE | p | % | SE | p | % | SE | p | % | SE | p | % | SE | p | |
CpG 1 | −1.43 | 0.62 | 0.02 | −0.06 | 0.21 | 0.76 | +0.94 | 0.41 | 0.02 | +1.34 | 0.68 | 0.05 | −0.60 | 0.35 | 0.09 | |||
CpG 2 | +2.33 | 0.89 | 0.01 | −2.01 | 0.88 | 0.03 | +0.21 | 0.16 | 0.19 | +0.18 | 0.72 | 0.81 | +1.43 | 1.61 | 0.38 | −0.38 | 0.29 | 0.20 |
CpG 3 | +1.20 | 0.66 | 0.08 | −2.12 | 0.92 | 0.02 | +0.44 | 0.27 | 0.11 | +0.27 | 0.66 | 0.69 | +1.41 | 0.58 | 0.02 | −0.70 | 0.31 | 0.03 |
CpG 4 | +0.44 | 0.83 | 0.59 | −1.99 | 0.84 | 0.02 | +0.18 | 0.38 | 0.64 | +1.31 | 0.51 | 0.01 | −0.41 | 0.32 | 0.21 | |||
CpG 5 | +0.89 | 0.76 | 0.24 | −2.04 | 0.91 | 0.03 | −0.42 | 0.29 | 0.15 | |||||||||
CpG 6 | −2.04 | 0.91 | 0.03 | −0.50 | 0.28 | 0.08 | ||||||||||||
CpG 7 | −2.19 | 0.86 | 0.01 | |||||||||||||||
CpG 8 | −1.99 | 0.86 | 0.02 | |||||||||||||||
CpG 9 | ||||||||||||||||||
CpG 10 | ||||||||||||||||||
Mean | +1.22 | 0.59 | 0.04 | −1.99 | 0.84 | 0.02 | +0.19 | 0.17 | 0.26 | +0.46 | 0.52 | 0.38 | +1.37 | 0.62 | 0.03 | −0.50 | 0.29 | 0.09 |
CpG site | NNAT | NDN | SNRPN | SGCE/PEG10 | PEG3 | PLAGL1 | ||||||||||||
% | SE | p | % | SE | p | % | SE | p | % | SE | p | % | SE | p | % | SE | p | |
CpG 1 | −0.71 | 0.58 | 0.22 | −1.13 | 0.53 | 0.04 | −0.60 | 0.31 | 0.05 | −2.04 | 0.98 | 0.04 | −0.73 | 0.40 | 0.07 | −2.79 | 1.78 | 0.12 |
CpG 2 | −0.67 | 0.47 | 0.16 | −1.28 | 0.56 | 0.03 | −0.65 | 0.28 | 0.02 | −2.27 | 1.02 | 0.03 | −0.82 | 0.44 | 0.07 | −2.93 | 1.76 | 0.10 |
CpG 3 | −0.49 | 0.55 | 0.37 | −0.75 | 0.36 | 0.04 | −0.76 | 0.33 | 0.02 | −2.49 | 1.05 | 0.02 | −0.66 | 0.45 | 0.14 | −2.36 | 1.72 | 0.17 |
CpG 4 | −1.13 | 0.53 | 0.04 | −0.64 | 0.25 | 0.01 | −2.61 | 0.97 | 0.01 | −0.70 | 0.38 | 0.07 | −3.13 | 1.74 | 0.08 | |||
CpG 5 | −1.22 | 0.52 | 0.02 | −2.78 | 1.02 | 0.01 | −0.88 | 0.50 | 0.08 | −2.63 | 1.67 | 0.12 | ||||||
CpG 6 | −1.08 | 0.44 | 0.02 | −2.85 | 1.07 | 0.01 | −0.80 | 0.45 | 0.08 | −2.10 | 1.54 | 0.18 | ||||||
CpG 7 | −0.74 | 0.43 | 0.09 | |||||||||||||||
CpG 8 | −0.61 | 0.39 | 0.12 | |||||||||||||||
CpG 9 | −0.75 | 0.43 | 0.09 | |||||||||||||||
CpG 10 | −0.62 | 0.39 | 0.12 | |||||||||||||||
Mean | −0.62 | 0.50 | 0.22 | −1.10 | 0.47 | 0.02 | −0.65 | 0.27 | 0.02 | −2.51 | 1.01 | 0.01 | −0.73 | 0.42 | 0.09 | −2.66 | 1.67 | 0.12 |
The model shown adjusts for age (as a continuous variable) and being a patient (yes/no) at the fertility clinic as possible confounding variables. Percentages for each CpG site represent the deviation of methylation percentage for overweight/obese men (BMI ≥ 25) from the methylation percentage of normal weight men (BMI < 25). These deviations were also averaged over all CpG sites associated with a particular imprinted gene (shown on the bottom line).