Table 1B.
Significantly enriched GO terms for Biological Process P < 0.01 with Negative Log2 fold change, indicating down-regulation in response to N depletion.
| GO term | Description | Annotated | Significant | Expected | P-value |
|---|---|---|---|---|---|
| GO:0022900 | Electron transport chain | 162 | 8 | 0.47 | 5.70E-08 |
| GO:0015979 | Photosynthesis | 619 | 9 | 1.79 | 2.20E-05 |
| GO:0009767 | Photosynthetic electron transport chain | 52 | 6 | 0.15 | 6.30E-05 |
| GO:0018298 | Protein-chromophore linkage | 274 | 6 | 0.79 | 7.20E-05 |
| GO:0006351 | Transcription, DNA-templated | 1394 | 8 | 4.04 | 1.10E-04 |
| GO:0009636 | Response to Toxic Substance | 153 | 4 | 0.44 | 3.20E-04 |
| GO:0044271 | Cellular nitrogen compound biosynthetic process | 2530 | 12 | 7.33 | 3.20E-04 |
| GO:2000112 | Regulation of Cellular Macromolecule Biosynthetic Process | 1850 | 9 | 5.36 | 4.40E-04 |
| GO:0006091 | Generation of Precursor Metabolites And Energy | 933 | 9 | 2.7 | 5.20E-04 |
| GO:0055114 | Oxidation-reduction process | 902 | 10 | 2.61 | 5.60E-04 |
| GO:0018130 | Heterocycle biosynthetic process | 2415 | 11 | 7 | 1.22E-03 |
| GO:0019438 | Aromatic compound biosynthetic process | 2444 | 11 | 7.08 | 1.27E-03 |
| GO:0009064 | Glutamine family amino acid metabolic process | 171 | 5 | 0.5 | 1.49E-03 |
| GO:1901362 | Organic cyclic compound biosynthetic process | 2620 | 12 | 7.59 | 1.83E-03 |
| GO:0032774 | RNA biosynthetic process | 1424 | 8 | 4.12 | 2.17E-03 |
| GO:0010556 | Regulation of Macromolecule Biosynthetic Process | 1870 | 9 | 5.42 | 2.27E-03 |
| GO:0006811 | Ion transport | 2297 | 17 | 6.65 | 2.32E-03 |
| GO:0030509 | BMP signaling pathway | 20 | 2 | 0.06 | 2.47E-03 |
| GO:0051340 | Regulation of ligase activity | 31 | 2 | 0.09 | 3.54E-03 |
| GO:0015849 | Organic acid transport | 268 | 5 | 0.78 | 3.96E-03 |
| GO:0071705 | Nitrogen compound transport | 591 | 7 | 1.71 | 4.08E-03 |
| GO:0035335 | Peptidyl-tyrosine dephosphorylation | 17 | 2 | 0.05 | 4.90E-03 |
| GO:0060255 | Regulation of macromolecule metabolic process | 2824 | 11 | 8.18 | 5.79E-03 |
| GO:0000041 | Transition metal ion transport | 78 | 3 | 0.23 | 6.09E-03 |
| GO:1903320 | Regulation of protein modification by small protein conjugation or removal | 139 | 3 | 0.4 | 6.75E-03 |
| GO:0031396 | Regulation of protein ubiquitination | 125 | 3 | 0.36 | 7.52E-03 |
| GO:0051252 | Regulation of RNA metabolic process | 1393 | 8 | 4.03 | 7.88E-03 |
See Supplemental Table 7 for complete list.