Table 2. Exon sequencing data summary.
Exome capture statistics | Sample |
|||||||
---|---|---|---|---|---|---|---|---|
P1 | P2 | P3 | P4 | P5 | P6 | P7 | P8 | |
Initial bases on target | 51543125 | 51543125 | 51543125 | 51543125 | 51543125 | 51543125 | 51543125 | 51543125 |
Total effective reads | 75899756 | 79734481 | 86586748 | 77653615 | 88308120 | 59564257 | 81497876 | 101930390 |
Total effective yield (Mb) | 6765.23 | 7106.16 | 7730.69 | 6923.94 | 7869.24 | 5310.08 | 7276.14 | 9093.9 |
Average read length (bp) | 89.13 | 89.12 | 89.28 | 89.16 | 89.11 | 89.15 | 89.28 | 89.22 |
Number of reads uniquely mapped to target | 37836108 | 36730995 | 37985759 | 37747936 | 38384211 | 35029879 | 37527575 | 38836426 |
Number of reads uniquely mapped to genome | 67787246 | 71481223 | 77694661 | 69327742 | 79613569 | 52915432 | 72767207 | 91803083 |
Mismatch rate in all effective sequence (%) | 0.22 | 0.23 | 0.21 | 0.22 | 0.21 | 0.19 | 0.22 | 0.22 |
Average sequencing depth on target (X) | 61.64 | 60.27 | 62.23 | 61.71 | 62.31 | 57.39 | 61.78 | 63.2 |
Coverage of target region (%) | 98.6 | 99.2 | 99.1 | 99.1 | 98.9 | 98.6 | 99.3 | 99.2 |
Fraction of target covered > = 20X (%) | 79.4 | 79.9 | 81.5 | 89.4 | 80.1 | 77.5 | 81.1 | 80.6 |
Fraction of target covered > = 10X (%) | 88.8 | 89.6 | 90.4 | 89.7 | 89.4 | 87.9 | 90.2 | 89.9 |
Fraction of target covered > = 4X (%) | 94.9 | 95.9 | 96.2 | 95.8 | 95.5 | 94.6 | 96.2 | 96 |
P, patient. The average sequencing depth on target were all more than 57X in eight samples, Coverage of target region were over 98%.