Table 4. Comparison between GISTIC and WIFA-Seq for OV.

Chr	Genes	WIFA				GISTIC
		cluster.start	cluster.end	cluster.length	FDC	peak.start	peak.end	peak.length
1	MYCL	38952601	41868301	2915701	1|2|3|4|5	39231800	41878565	2646766
1	MCL1	147794101	151448201	3654101	4|5
3	MECOM	160721001	178997301	18276301	1|2|3|4|5
4	TACC3	1743701	10725801	8982101	1|2|3|4|5
4	ANKRD17	69261001	75913501	6652501	1|2|3|4|5
5	TERT	9901	1850001	1840101	4|5
8	SOX17	54155101	55670501	1515401	4|5
8	MYC	124682001	137671301	12989301	1|2|3|4|5	126952807	132241106	5288300
10	PTEN	85985501	91954501	5969001	1|2|3|4|5	84746048	100217807	15471760
11	ALG8	65642401	85427201	19784801	1|2|3|4|5
12	KRAS	22892501	27931501	5039001	1|2|3|4|5
13	RB1	47517901	49138401	1620501	2|3|4|5	48833767	53194688	4360922
14	METTL17	20540801	23461401	2920601	1|2|3|4|5
17	NF1	29302301	29948501	646201	2|3|4|5
19	CCNE1	27731701	31299201	3567501	1|2|3|4|5	30258695	30343163	84469

For both methods, genes were included in clusters/peaks. Thus, start and end positions and the length of clusters/peaks are specified. A column FDC indicates FDCs that identified the given genes.