Table 3.
Counts of Retained and Lost Paralogs in Gc Classed Orthogroups for Sorghum and Rice with Chi-Squared Test Results
| Paralog Source | Event | High GC | Low GC | Mixed | Chi Sq. | P value |
|---|---|---|---|---|---|---|
| Synteny | Rho retained duplicate | 35 | 279 | 86 | 80.6502 | <0.00001 |
| Synteny | Rho duplicate lost | 3,627 | 6,491 | 2,509 | ||
| Synteny | Sigma retained duplicate | 0 | 24 | 4 | 14.4838 | 0.000716 |
| Synteny | Sigma duplicate Lost | 3,662 | 6,746 | 2,591 | ||
| Synteny | Tau retained duplicate | 5 | 53 | 20 | 18.2902 | 0.000107 |
| Synteny | Tau duplicate lost | 3,657 | 6,717 | 2,575 | ||
| Gene trees | Rho retained duplicate | 51 | 385 | 133 | 109.3626 | <0.00001 |
| Gene trees | Rho duplicate lost | 3,611 | 6,385 | 2,462 | ||
| Gene trees | Sigma retained duplicate | 15 | 163 | 48 | 55.9048 | <0.00001 |
| Gene trees | Sigma duplicate lost | 3,647 | 6,607 | 2,547 | ||
| Gene trees | Tau retained duplicate | 75 | 235 | 95 | 19.256 | 0.000066 |
| Gene trees | Tau duplicate lost | 3,587 | 6,535 | 2,500 |