Table 1.

Parameters associated with the genotypic BLUP QTLs

The first column indicates the type of analysis, the second one the trait concerned, and the following columns indicate the LG where the QTL is located, the 2×lnBF value at the LG scale for a 1 QTL over a 0 QTL model, the 2×lnBF value at the local scale, the position of the QTL region in cM, the additive QTL effect, the frequency of the positive allele, its variance, and its percentage of variance explained. The 2×lnBF values for multi-QTL models were not presented because none of them passed the significance threshold. The QTLs with a 2×lnBF at the LG scale higher than 5 are in bold.

Analysis	trait	LG	2×lnBF_LG	max 2×lnBF_loc	Pos (cM)	add	fq	var	%var
Multisite	BB_CD	3	4.8	7.0	1–21	0.77	0.40	0.28	4.6
		7	9.4	7.5	54–88	1.17	0.51	0.69	11.1
		8	3.8	4.8	11–47	0.98	0.71	0.39	6.3
		9	29.9	8.8	0–11	1.76	0.21	1.03	16.6
		10	10.9	8.6	22–35	0.92	0.65	0.35	5.6
		12	29.9	8.6	37–43	2.05	0.80	1.32	21.3
		15	9.1	9.5	105–111	0.99	0.70	0.42	6.7
	BB_GDH	7	29.4	6.3	56–84	189.8	0.24	13 070	21.3
		9	30.1	8.8	4–10	193.0	0.82	11 139	18.2
		10	9.4	9.2	28–34	106.4	0.53	5640	9.2
		12	29.6	7.3	19–43	182.0	0.67	14 726	24.0
	delta_GDH	8	3.5	5.5	1–9	59.4	0.64	1628	5.2
		9	4.4	6.9	4–14	98.9	0.24	3572	11.5
Mtp	BB_CD	7	4.0	5.9	56–84	1.45	0.45	1.0	10.4
		8	5.1	5.0	9–31	1.15	0.51	0.7	6.6
		9	4.8	7.0	2–14	1.63	0.51	1.3	13.3
		10	3.0	5.1	26–40	1.14	0.60	0.6	6.2
		12	6.1	6.6	19–67	1.88	0.62	1.7	16.7
	BB_GDH	7	7.2	6.8	54–86	153.3	0.47	11 723	12.0
		9	10.2	8.6	2–12	183.7	0.49	16 858	17.2
		10	3.2	6.3	26–40	108.9	0.59	5722	5.8
		12	10.4	6.7	19–43	189.0	0.56	17 609	18.0
	delta_GDH	9	3.6	5.5	2–14	107.4	0.40	5538	15.9
		14	3.4	4.9	21–37	89.7	0.46	3993	11.5
An	BB_CD	6	4.5	8.0	1–15	0.55	0.59	0.1	6.6
		10	4.3	6.4	16–34	0.65	0.50	0.2	9.5
		15	4.0	4.4	77–109	0.70	0.65	0.2	10.0
	BB_GDH	no QTL
	delta_GDH	2	2.5	4.0	13–35	60.9	0.52	1851	6.9
		3	2.7	5.2	59–79	58.8	0.48	1724	6.4