Table 1. Primers and probes used in real-time PCR for Ehrlichia and Anaplasma species, United States*.
Name | Sequence, 5′ → 3′ | Concentration, nmol/L | Species detected |
---|---|---|---|
Primer 1 | GCATTACTCACCCGTCTGCCACT | 250 | – |
Primer 2 | CAAGCCTAACACATGCAAGTCGAACG | 1,000 | – |
Probe 1 | MGB-FAM-AGGT†T†ATAA†GCA†ATTGTCC-EDQ | 200 | E. chaffenisis |
Probe 2 | MGB-(AP642)-AAGCTATA†GGCA†GT†TA†TCC-EDQ | 200 | E. muris–like agent |
Probe 3 | MGB-(AP593)-GGCTATA†A†ATA†A†TTGT†CCG-EDQ | 200 | E. canis |
Probe 4 | MGB-(AP593)-CTATTTA†GGA†A†TTGT†T†C-EDQ | 200 | E. ewingii |
Probe 5 | MGB-(AP525)-AAAGAAT†A†A†TCCGTTCG-EDQ | 200 | A. phagocytophilum |
*–, these primers are specific for 5 organisms; MGB, minor groove binder; FAM, 6-carboxyfluorescein; EDQ, Eclipse Dark Quencher (Epoch Biosciences Inc., Bothell, WA, USA). †Use of Super A, T, or G (Epoch Biosciences Inc.).