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. 2016 May;22(5):862–865. doi: 10.3201/eid2205.152009

Table 1. Primers and probes used in real-time PCR for Ehrlichia and Anaplasma species, United States*.

Name Sequence, 5′ → 3′ Concentration, nmol/L Species detected
Primer 1 GCATTACTCACCCGTCTGCCACT 250
Primer 2 CAAGCCTAACACATGCAAGTCGAACG 1,000
Probe 1 MGB-FAM-AGGT†T†ATAA†GCA†ATTGTCC-EDQ 200 E. chaffenisis
Probe 2 MGB-(AP642)-AAGCTATA†GGCA†GT†TA†TCC-EDQ 200 E. muris–like agent
Probe 3 MGB-(AP593)-GGCTATA†A†ATA†A†TTGT†CCG-EDQ 200 E. canis
Probe 4 MGB-(AP593)-CTATTTA†GGA†A†TTGT†T†C-EDQ 200 E. ewingii
Probe 5 MGB-(AP525)-AAAGAAT†A†A†TCCGTTCG-EDQ 200 A. phagocytophilum

*–, these primers are specific for 5 organisms; MGB, minor groove binder; FAM, 6-carboxyfluorescein; EDQ, Eclipse Dark Quencher (Epoch Biosciences Inc., Bothell, WA, USA).
†Use of Super A, T, or G (Epoch Biosciences Inc.).