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. 2016 May 10;6:25711. doi: 10.1038/srep25711

Table 1. List of human RBPs, their number of target transcripts and source of CLIP data.

RBP # targets Source of CLIP-Seq data (References)
AGO1 17,206 67,68
AGO2 64,425 67, 68, 69, 70, 71, 72, 73, 74, 75, 76
AGO3 5,849 67
AGO4 1,517 67
ALKBH5 1,685 77
ATXN2 6,715 78
C17ORF85 2,199 77
CAPRIN1 7,506 77
CPSF1 9,132 79
CPSF2 1,813 79
CPSF3 2,832 79
CPSF4 3,486 79
CPSF6 38,973 79
CPSF7 45,556 79
CSTF2 36,829 79,80
CSTF2T 32,893 79
DGCR8 14,587 81
EIF4A3 35,729 82
ELAVL1 55,432 69,83, 84, 85
EWSR1 6,702 86,87
EZH2 116 88
FBL 4,019 89
FIP1L1 34,643 79
FMR1 10,732 90
FUS 2,150 87,91,92
FXR1 2,940 90
FXR2 9,230 90
HNRNPA1 9,587 93
HNRNPA2B1 2,013 93
HNRNPC 18,806 94,95
HNRNPD 6,121 96
HNRNPF 3,461 93
HNRNPH 3,608 97
HNRNPM 3,051 93
HNRNPU 10,318 93,98
IGF2BP1 15,328 67
IGF2BP2 10,668 67
IGF2BP3 10,022 67
LIN28A 16,860 42,99
LIN28B 21,277 99,100
MOV10 7,523 101
NOP56 2,007 89
NOP58 7,879 89
NUDT21 40,541 79
PTBP1 25,385 102,103
PTBP2 16,956 102,103
PUM2 1,938 67
QKI 1,358 67
RTCB 6,376 77
SRRM4 10,026 103
TAF15 3,197 87,104
TARDBP 12,138 105
TIA1 11,977 106
TIAL1 23,854 106
TNRC6A 828 67
TNRC6B 643 67
TNRC6C 859 67
WDR33 1,626 107
YTHDF2 15,474 108
ZC3H7B 13,294 77

Table shows a list of all the 60 RBPs employed in the analysis, the number of transcripts targeted by each of them and references to the studies which provide the CLIP-Seq data28. This list was generated by mapping the binding sites of each RBP with exonic coordinates and obtaining the corresponding transcripts of the mapped exons.