Table 1.

TE contribution of every order and superfamily (kb) to the D. buzzatii (st-1 and j-19 before and after the correction) and D. mojavensis genomes^a

Superfamily	D. buz				D. moj
	st-1	st-1 corr.	j-19	j-19 corr.
	2366.44	4693.31	1243.43	2050.57	9953.02
LTR Total	(17.38 %)	(26.03 %)	(19.54 %)	(17.62 %)	(33.46 %)
BelPao	435.35	1025.76	198.65	432.82	2255.95
Copia	309.80	522.62	162.75	275.82	718.71
ERVK	10.92	9.97	8.09	7.52	18.06
Gypsy	1610.37	3134.95	873.94	1334.42	6960.30
	2541.65	3401.72	1551.05	2221.12	5977.29
LINE Total	(18.66 %)	(18.87 %)	(24.37 %)	(19.08 %)	(20.09 %)
CR1	396.35	761.48	117.39	546.88	947.96
I	74.63	136.15	20.19	38.59	110.53
Jockey	478.24	600.72	246.54	345.78	765.64
L1	6.71	6.01	6.70	5.63	8.08
L2	191.37	213.18	145.73	148.74	395.99
LOA	1.18	1.31	0.82	0.65	1.95
R1	1383.35	1663.22	1011.77	1133.23	3721.30
R2	1.49	9.30	0.51	0.38	23.03
R4	1.57	0.80	0.70	0.57	1.37
RTE	6.76	9.55	0.69	0.68	1.43
	2016.98	2476.88	919.50	1820.64	2747.83
TIR Total	(14.81 %)	(13.74 %)	(14.46 %)	(15.64 %)	(9.24 %)
hAT	563.03	661.13	239.06	414.90	654.13
Mutator	21.00	16.32	16.14	14.05	22.73
Novosib	17.35	16.43	11.89	10.77	16.15
P	590.70	830.17	216.28	713.43	752.39
PIF/Harbinger	3.81	9.71	2.21	2.45	7.82
piggyBack	18.67	9.46	5.38	5.79	77.21
Tc1/mariner	407.93	507.35	186.38	363.43	534.42
Transib	281.27	115.97	172.40	211.64	627.54
TIR other	113.23	310.35	69.75	84.18	55.43
	5531.01	6331.89	1950.81	4689.50	10083.94
Helitron	(40.61 %)	(35.12 %)	(30.65 %)	(40.29 %)	(33.90 %)
	189.27	129.44	118.57	100.34	263.81
Maverick	(1.39 %)	(0.72 %)	(1.86 %)	(0.86 %)	(0.89 %)
	0.24	0.11	0.67	0.40	0.19
Others	(0 %)	(0 %)	(0 %)	(0 %)	(0 %)
	973.76	994.61	580.02	756.66c	721.26
Unknown	(7.15 %)	(5.52 %)	(9.11 %)	(6.50 %)	(2.42 %)
Total	13619.34	18027.96	6364.04	11639.23	29747.33

^aOrder contributions, relative to the total TE fraction, are given in percentages

^bOrder total values are shown in boldface