Table 1.
Distribution of small RNA reads among different categories in the sRNA library after dark, Blue light or UV-A treatment of Brassica rapa subsup. rapa cv. Tsuda
| Category | Dark treatment | Blue light treatment | UV-A light treatment | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Unique sRNAs | Percent (%) | Total sRNAs | Percent (%) | Unique sRNAs | Percent (%) | Total sRNAs | Percent (%) | Unique sRNAs | Percent (%) | Total sRNAs | Percent (%) | |
| Total | 359,531 | 100 % | 13,319,035 | 100 % | 337,524 | 100% | 12,727,958 | 100 % | 298,261 | 100 % | 1,105,3984 | 100 % |
| exon_ antisense |
7952 | 2.21 % | 151,963 | 1.14 % | 7847 | 2.32% | 117,444 | 0.92 % | 7742 | 2.60 % | 167,459 | 1.51 % |
| exon_ sense |
7916 | 2.20 % | 94,268 | 0.71 % | 7545 | 2.24% | 100,660 | 0.79 % | 7259 | 2.43 % | 79,121 | 0.72 % |
| intron_ antisense |
12,312 | 3.42 % | 183,025 | 1.37 % | 11,345 | 3.36% | 148,510 | 1.17 % | 9167 | 3.07 % | 146,973 | 1.33 % |
| intron_ sense |
19,413 | 5.40 % | 274,427 | 2.06 % | 17,941 | 5.32% | 250,571 | 1.97 % | 13,782 | 4.62 % | 183,113 | 1.66 % |
| miRNA | 2,349 | 0.65 % | 7,033,801 | 52.81 % | 2,365 | 0.70% | 5,365,249 | 42.15 % | 2,395 | 0.80 % | 4,042,699 | 36.57 % |
| rRNA | 20,611 | 5.73 % | 1,235,211 | 9.27 % | 22,614 | 6.70% | 864,612 | 6.79 % | 35,121 | 11.78 % | 1,412,822 | 12.78 % |
| snRNA | 311 | 0.09 % | 2,640 | 0.02 % | 383 | 0.11% | 3,134 | 0.02 % | 394 | 0.13 % | 3,668 | 0.03 % |
| snoRNA | 189 | 0.05 % | 1546 | 0.01 % | 457 | 0.14% | 7999 | 0.06 % | 324 | 0.11 % | 3431 | 0.03 % |
| tRNA | 5715 | 1.59 % | 1,137,537 | 8.54 % | 10,857 | 3.22% | 2,791,679 | 21.93 % | 11,743 | 3.94 % | 1,945,982 | 17.60 % |
| unann | 282,763 | 78.65 % | 3,204,617 | 24.06 % | 256,170 | 75.90% | 3,078,100 | 24.18 % | 210,334 | 70.52 % | 3,068,716 | 27.76 % |