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. 2016 May 10;9:18. doi: 10.1186/s13040-016-0094-4

Table 2.

Comparison of AUC for GEBN and logistic regression

Functional SNPs in Case data Functional SNPs in Control data Weight (W) MAX Regression GENN GEBN
100 100 500 100 500 100 500
Main effect SNP A SNP A 0.1 55 52 51 54 54 53 52
0.5 71 71 64 70 71 71 67
0.9 88 88 72 88 88 88 87
SNP A, B, C, D SNP A, B, C, D 0.1 61 57 53 54 54 58 54
0.5 90 89 72 73 73 89 87
0.9 99 96 87 98 98 99 99
Interaction effect SNP A * SNP B None 0.1 53 50 50 50 50 50 50
0.5 67 50 49 56 53 65 60
0.9 89 50 50 60 59 80 77
SNP A * SNP B SNP W * SNP X 0.1 56 50 50 50 50 52 51
SNP C * SNP D SNP Y * SNP Z 0.5 82 50 50 57 55 81 67
0.9 97 49 50 62 60 97 89