Fig. 4.

Differences of motifs predicted by ${\mathcal{ℳ}}_{-}^{\mathrm{C}}$ and ${\mathcal{ℳ}}_{\text{BA}}^{\mathrm{C}}$. The height of the base stacks is quantified by the Jensen-Shannon divergence, where high base stacks represent high motif differences. We find significant motif differences exceeding 0.1 bit for all five data sets (Additional file 1: Figure S5, Figure S6, Figure S7, Figure S8 and Figure S9)