Table 2.
Examples of typical reaction types of ODE models.
# | Stoichiometry | Reaction type | Flux | Contribution to |
---|---|---|---|---|
1 | ∅ → A | Production | k | Positive/influx |
2 | A → ∅, B | Degradation, transformation | k · A | Negative/outflux |
3 | A + A → AA | Dimerization | k · A2 | Negative/outflux |
4 | B → A | Transformation | k · B | Positive/influx |
5 | B + C → A | Binding | k · B · C | Positive/influx |
6 | B → A | Inhibition by C | Positive/influx | |
7 | B → A | Michaelis-Menten | Positive/influx | |
8 | A + B → C | Binding | k · A · B | Negative/outflux |
9 | A → B | Inhibition by C | Negative/outflux | |
10 | A → B | Michaelis-Menten | Negative/outflux | |
11 | B → A | Hill | Positive/influx | |
12 | ∅ → A | Self-activation | Positive/influx | |
13 | B + C → A | Power-law | Positive/influx |
All types are covered by our steady-state approach.