Table 2.
Examples of typical reaction types of ODE models.
| # | Stoichiometry | Reaction type | Flux | Contribution to |
|---|---|---|---|---|
| 1 | ∅ → A | Production | k | Positive/influx |
| 2 | A → ∅, B | Degradation, transformation | k · A | Negative/outflux |
| 3 | A + A → AA | Dimerization | k · A2 | Negative/outflux |
| 4 | B → A | Transformation | k · B | Positive/influx |
| 5 | B + C → A | Binding | k · B · C | Positive/influx |
| 6 | B → A | Inhibition by C | Positive/influx | |
| 7 | B → A | Michaelis-Menten | Positive/influx | |
| 8 | A + B → C | Binding | k · A · B | Negative/outflux |
| 9 | A → B | Inhibition by C | Negative/outflux | |
| 10 | A → B | Michaelis-Menten | Negative/outflux | |
| 11 | B → A | Hill | Positive/influx | |
| 12 | ∅ → A | Self-activation | Positive/influx | |
| 13 | B + C → A | Power-law | Positive/influx |
All types are covered by our steady-state approach.