Table 1.
Summary of Somatic SVs in 15 Tumor Types
| Tumor Type | Abbreviation | Sample Size | Bad Samples | Good Samples | Total SVs | Average SVs per Sample | Massively Rearranged |
|---|---|---|---|---|---|---|---|
| Urothelial bladder cancer | BLCA | 185 | 3 | 182 | 370 | 2.03 | 6 |
| Breast cancer | BRCA | 781 | 93 | 688 | 3123 | 4.54 | 65 |
| Glioblastoma multiforme | GBM | 318 | 63 | 255 | 626 | 2.45 | 24 |
| Head and neck squamous cell carcinoma | HNSC | 377 | 0 | 377 | 413 | 1.10 | 4 |
| Clear cell kidney carcinoma | KIRC | 322 | 13 | 309 | 191 | 0.62 | 4 |
| Papillary kidney carcinoma | KIRP | 147 | 0 | 147 | 80 | 0.54 | 4 |
| Lower grade glioma | LGG | 272 | 0 | 272 | 218 | 0.80 | 6 |
| Liver hepatocellular carcinoma | LIHC | 98 | 0 | 98 | 350 | 3.57 | 2 |
| Lung adenocarcinoma | LUAD | 485 | 27 | 458 | 791 | 1.73 | 12 |
| Lung squamous cell carcinoma | LUSC | 460 | 23 | 437 | 837 | 1.92 | 9 |
| Prostate adenocarcinoma | PRAD | 235 | 1 | 234 | 331 | 1.41 | 6 |
| Cutaneous melanoma | SKCM | 311 | 1 | 310 | 577 | 1.86 | 24 |
| Stomach adenocarcinoma | STAD | 234 | 0 | 234 | 570 | 2.44 | 11 |
| Papillary thyroid carcinoma | THCA | 485 | 2 | 483 | 342 | 0.71 | 0 |
| Uterine corpus endometrial carcinoma | UCEC | 149 | 24 | 125 | 352 | 2.82 | 1 |
| Total | – | 4,859 | 250 | 4,609 | 9,171 | 1.99 | 178 |