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. Author manuscript; available in PMC: 2016 May 12.
Published in final edited form as: Cell Rep. 2016 Apr 28;15(6):1266–1276. doi: 10.1016/j.celrep.2016.04.010

Figure 3. Single-domain ENEs.

Figure 3

(A) Predicted secondary structures of selected ENEs. Note that the Tad1_NCr and Gypsy2_DFa-I ENEs are in inverted orientation. (B) Alignment of TE DNA and Dicistrovirus cDNA sequences corresponding to 50 ENEs and their flanking regions. Only standard-orientation ENEs are included. For clarity, sequences with ≥95% redundancy were discarded. Nucleotide coloring and shading are as in Figure 2. The organism name abbreviations are as follows: Dictyostelium fasciculatum - DFa, Polysphondylium pallidum PN500 – PPP, Saccharum hybrid cultivar –SHC, Melampsora larici-populina –MLP, Mycosphaerella graminicola IPO323 – MGI, Punctularia strigosozonata HHB-11173 –PSH, Coniophora puteana- CPu, Laccaria bicolor S238N – LBS. Other organism name abbreviations are as in Figure 2. MCDiV, TSV and MRTV stand for mud crab dicistrovirus, Taura syndrome virus and Macrobrachium rosenbergii Taihu virus, respectively. See also Figure S3.