Table 5.
Relative assembly scores for different read lengths
Quality metric | Read length | Genome | |||
---|---|---|---|---|---|
Bce | Efa | Sen | Pst | ||
Corrected NG50 | 100 | 0.52 | 0.68 | 0.54 | 0.996 |
125 | 0.82 | 0.90 | 0.79 | 0.995 | |
150 | 0.90 | 0.96 | 0.81 | 1 | |
175 | 1 | 1 | 0.95 | 0.995 | |
189 | 0.91 | 0.996 | 1 | 0.99 | |
max** | 541,348 | 419,532 | 358,280 | 213,754 | |
NGA50 | 100 | 0.55 | 0.95 | 0.71 | 1 |
125 | 0.75 | 1 | 0.86 | 0.86 | |
150 | 0.78 | 0.97 | 0.85 | 0.96 | |
175 | 0.996 | 0.99 | 0.94 | 0.98 | |
189 | 1 | 0.999 | 1 | 0.97 | |
max** | 898,406 | 424,840 | 455,293 | 249,244 |
Read length associated relative assembly scores are listed per genome for SPAdes assemblies. Relative assembly scores for Sen were determined in dependence on 3 assembly sets each. Each other genome comprised 6 assembly sets per relative assembly score
max** Absolute value in nucleotides of the maximal relative assembly score of the column