Table 7. Comparison of the original results of GapFiller and after manual curation with GapBlaster.
Staphylococcus aureus | #Gaps GF | #N GF | #Gaps after GB | #N after GB |
AbySS | 69 | 56355 | 66 | 54837 |
AbySS2 | 35 | 10003 | 30 | 8741 |
Allpaths-LG | 40 | 10472 | 39 | 10455 |
Bambus2 | 98 | 30771 | 97 | 30725 |
MSR-CA | 80 | 11651 | 76 | 9794 |
SGA | 654 | 312284 | 646 | 307095 |
Rhodobacter sphaeroides | #Gaps GF | #N GF | #Gaps after GB | #N after GB |
AbySS | 306 | 118298 | 304 | 118287 |
AbySS2 | 290 | 68052 | 288 | 67740 |
Allpaths-LG | 164 | 24001 | 163 | 23780 |
CABOG | 191 | 25011 | 190 | 24336 |
MSR-CA | 336 | 37494 | 333 | 33590 |
SGA | 930 | 1159235 | 929 | 1159162 |
The results produced by GapFiller were used as input for GapBlaster, and the organism/assemblies that were improved are shown. The #Gaps GF and #N GF show the amount of gaps and Ns, respectively, in the results of GapFiller. The #Gaps after GB and #N after GB show the amount of remaining gaps and Ns, respectively, after the use of GapBlaster.