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| Population | SNP call rate<95% | MAF<5% | Polymorphic loci (%) | HWE (p<0.001) | SNPs remaining (%) |
|---|---|---|---|---|---|
| Argentina | 3359 | 3623 | 49 724 (93.2) | 92 | 47 075 (88.2) |
| France | 1417 | 6152 | 47 195 (88.5) | 149 | 46 751 (87.6) |
| South Africa | 785 | 6262 | 47 085 (88.3) | 1757 | 44 957 (84.3) |
| Merged | 1825 | 2603 | 50 744 (95.1) | 3389 | 46 510 (87.2) |
