Table 1.

Quality of sequencing.

Sample ID	Raw reads	Clean reads	Clean bases	Error rate (%)	Q20a (%)	Q30b (%)	GC content (%)
T0_C	43446736	41711988	6.26G	0.02	95.79	90.18	50.54
T0_T	50923560	48608268	7.29G	0.02	95.57	89.7	52.27
T1	50649082	48561200	7.28G	0.02	95.92	90.44	51.17
T3	46208992	44198772	6.63G	0.02	95.74	90.05	51.68
T6	53880410	51532412	7.73G	0.02	95.24	89.02	51.52
T9	50788268	48390640	7.26G	0.02	95.68	89.9	51.05
T12	58462716	56057010	8.41G	0.02	95.9	90.38	51.33
T18	44173198	42506698	6.38G	0.02	95.98	90.52	51.54
T24	52617190	50101660	7.52G	0.02	95.57	89.67	52.13

^apercentage is the proportion of nucleotides with a quality value >20 in reads.

^bpercentage is the proportion of nucleotides with a quality value >30 in reads.