Table 2.
Results of the association analysis perfomed by Haploview.
SNP-ID | Associated allele |
Ratio counts |
Frequencies |
χ2 | p-value | ||
---|---|---|---|---|---|---|---|
Group O | Group N | Group O | Group N | ||||
rs653753 | C>G | 12:60 | 5:49 | 0.167 | 0.093 | 1.45 | 0.228 |
rs596881 | G>A | 4:68 | 7:47 | 0.056 | 0.130 | 2.12 | 0.145 |
rs316000 | A>G | 10:62 | 11:43 | 0.139 | 0.204 | 0.93 | 0.334 |
rs316002 | C>T | 5:67 | 8:46 | 0.069 | 0.148 | 2.07 | 0.151 |
rs316004 | G>T | 10:62 | 11:43 | 0.139 | 0.204 | 0.93 | 0.334 |
rs315988 | C>T | 11:61 | 13:41 | 0.153 | 0.241 | 1.55 | 0.213 |
rs17588242 | T>C | 20:52 | 13:41 | 0.278 | 0.241 | 0.22 | 0.640 |
rs8177513 | C>G | 0:72 | 1:53 | 0.000 | 0.019 | 1.34 | 0.255 |
rs316019 | G>T | 3:69 | 9:45 | 0.042 | 0.167 | 5.60 | 0.018 |
rs316024 | G>A | 18:54 | 16:38 | 0.250 | 0.296 | 0.34 | 0.562 |
rs10981694 | T>G | 7:65 | 8:46 | 0.097 | 0.148 | 0.76 | 0.382 |
χ2 test used throughout [36].