Table 2.
haplotypes | n | 4 | 6 | 7 | 11 | 32 | 37 | 47 | 65 | 70 | 135 | 144 | 155 | 168 | 185 | 232 | 237 | 240-366 | 368 | 369 | 374 | 376 | 377 | 383 | 388 | 394 | 395 | 396 | 397 | 399 | 400 | 402 | 406 | 409 | 410 | 435 | 439 | 443 | 445 | 446 | 450 | 467 | 485 | 525 | 536 | 597 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Ais_16S_n1 | 39 | A | T | A | G | T | C | T | G | G | G | G | G | T | G | A | A | - | T | C | T | A | T | G | A | G | A | C | T | C | T | A | A | A | A | A | T | G | G | A | G | A | A | T | G | A |
Ais_16S_n2 | 37 | . | C | . | . | . | . | . | . | . | . | . | . | C | . | . | . | - | . | . | . | . | . | . | G | . | . | . | . | . | . | G | . | . | . | . | C | . | . | . | . | . | . | C | . | . |
Ais_16S_n3 | 6 | . | . | . | . | . | . | . | . | . | . | . | . | C | . | . | . | - | . | . | . | . | . | . | G | . | . | . | . | . | . | . | . | . | . | . | C | . | . | . | . | . | . | . | . | . |
Ais_16S_n4 | 3 | . | C | . | . | . | . | . | . | . | . | . | . | C | . | . | . | - | . | T | . | . | . | . | G | . | . | . | . | . | . | G | . | . | . | . | C | . | . | . | . | . | . | C | . | . |
Ais_16S_n5 | 3 | . | . | . | . | . | . | . | . | . | . | . | . | C | . | . | . | - | . | . | . | . | . | . | G | . | . | T | . | . | . | . | . | . | . | . | C | . | . | . | . | . | . | . | . | . |
Ais_16S_n6 | 3 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | - | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | A | . | . | . | . | . |
Ais_16S_n7 | 2 | . | C | . | . | . | . | . | . | . | . | . | . | C | . | . | . | - | . | . | C | . | . | . | G | . | . | . | . | . | . | G | . | . | . | . | C | . | . | . | . | . | . | C | . | . |
Ais_16S_n8 | 2 | . | C | . | . | . | . | . | . | . | . | . | . | . | . | . | . | - | . | . | . | . | . | . | G | . | . | . | . | . | . | G | . | . | . | . | C | . | . | . | . | . | . | C | . | . |
Ais_16S_n9 | 1 | . | . | G | . | . | . | . | . | . | . | . | . | C | . | . | . | - | . | . | . | . | . | . | G | . | . | . | . | . | . | . | . | . | . | . | C | . | . | . | . | . | . | C | . | . |
Ais_16S_d1 | 7 | G | . | . | A | G | T | A | A | A | . | . | A | C | A | . | . | 127 bp indel | . | T | . | G | A | A | G | A | C | T | G | T | . | G | - | G | G | G | C | . | A | G | . | G | G | C | A | . |
Ais_16S_d2 | 3 | G | . | . | A | G | T | A | A | A | A | . | A | C | A | . | . | 127 bp indel | . | T | . | G | A | A | G | A | C | T | G | T | . | G | - | G | G | G | C | . | A | G | . | G | G | C | A | . |
Ais_16S_d3 | 1 | G | . | . | A | G | T | A | A | A | A | . | A | C | A | . | . | 127 bp indel (pos 344: G) | . | T | . | G | A | A | G | A | C | T | G | T | . | G | - | G | G | G | C | . | A | G | . | G | G | C | A | G |
Ais_16S_d4 | 1 | G | . | . | . | G | T | A | A | A | . | . | A | C | A | . | . | 127 bp indel | . | T | . | G | A | A | G | A | C | T | G | T | . | G | - | G | G | G | C | . | A | G | . | G | G | C | A | . |
Ais_16S_d5 | 1 | G | . | . | A | G | T | A | A | A | . | . | A | C | A | . | . | 127 bp indel | . | T | . | G | A | A | G | A | C | T | G | T | C | G | - | G | G | G | C | . | A | G | . | G | G | C | A | . |
Ais_16S_d6 | 1 | G | . | . | A | G | T | A | A | A | A | . | A | C | A | . | . | 127 bp indel | . | T | . | G | A | A | G | A | C | T | G | T | . | G | - | G | G | G | C | A | A | G | . | G | G | C | A | . |
Ais_16S_d7 | 1 | G | . | . | A | G | T | A | A | A | . | A | A | C | A | G | G | 127 bp indel | . | T | . | G | A | A | G | A | C | T | G | T | . | G | - | G | G | G | C | . | A | G | . | G | G | C | A | . |
Ais_16S_d8 | 1 | T | . | . | A | G | T | A | A | A | . | . | A | C | A | . | . | 127 bp indel | . | T | . | G | A | A | G | A | C | T | G | T | . | G | - | G | G | G | C | . | A | G | . | G | G | C | A | . |
Ais_16S_d9 | 1 | G | . | . | A | G | T | A | A | A | A | . | A | C | A | . | . | 127 bp indel | C | T | . | G | A | A | G | A | C | T | G | T | . | G | - | G | G | G | C | . | A | G | . | G | G | C | A | . |
Ais_16S_d10 | 1 | G | . | . | A | G | T | A | A | A | . | . | A | C | A | . | . | 127 bp indel (pos 354: A) | . | T | . | G | A | A | G | A | C | T | G | T | . | G | - | G | G | G | C | . | A | G | . | G | G | C | A | . |
Note.—Numbers indicate the position along the longest fragment (624 bp).