Table 1. DNA yield measured by fluorescence-based method of quantification (SYBR Green I) represented by the mean ± SEM for ng of DNA per µg of Daphnia dry mass.
Missing values are due to salt precipitation from RNA later solution. Comparisons were made between the groups with same homogenisation method and with same extraction method. Same letters indicate the groups that differ statistically.
| Preservation | Extraction method | Homogenisation method | ||
|---|---|---|---|---|
| Ceramic bead homogenisation | Plastic pellet pestles | Proteinase K digestion | ||
| Liquid Nitrogen | Agencourt DNAdvance | 5.40 ± 0.12a,b,d | 4.10 ± 0.23c | 2.77 ± 0.18d |
| CTAB method | 3.13 ± 0.71b | 3.52 ± 0.79c | 2.29 ± 0.17 | |
| MasterPure DNA | 5.45 ± 0.91a,b,e | 3.10 ± 0.63e | 2.93 ± 0.42e | |
| ZR genomic DNA | 1.65 ± 0.10a | 1.26 ± 0.09c | 0.97 ± 0.05 | |
| RNAlater solution | Agencourt DNAdvance | 4.07 ± 0.20 | 4.37 ± 0.08f | 3.93 ± 0.20g |
| CTAB method | 2.26 ± 0.03 | 4.13 ± 0.87f | – | |
| MasterPure DNA | – | – | – | |
| ZR genomic DNA | 2.07 ± 0.16 | 1.52 ± 0.16f | 0.97 ± 0.03g | |
Notes.
P-values are indicated accordantly.
p < 0.0001.
p < 0.05.
p < 0.05.
p < 0.01.
p < 0.05.
p < 0.01.
p < 0.01.