Table S1.
Coverage | Reference | SNP | Coordinates on Chr. 1 | SNP location in annotation | Annotation of region with SNP | Gene name | Amino acid change |
9 | C | T | 29,759,319 | 5′UTR | Pyruvate decarboxylase | At1g79110 | — |
8 | C | T | 29,846,184 | Gene | EMB1135 | At1g79350 | No change |
3 | A | G | 29,983,760 | Intergenic | — | — | — |
3 | T | C | 29,983,779 | Intergenic | — | — | — |
11 | C | T | 30,116,432 | Gene | Ubiquitin-like | At1g80060 | R to K |
10 | C | T | 30,122,310 | Gene | SUS2 | At1g80070 | P1141S |
14 | C | T | 30,148,084 | Gene | Pectin lyase-like | At1g80140 | No change |
11 | C | T | 30,159,879 | Intron | PSF1 component | At1g80190 | — |
6 | C | T | 30,344,751 | Gene | CMT1 | At1g80740 | No change |
4 | C | T | 30,354,337 | Intergenic | — | — | — |
12 | C | T | 30,367,988 | Gene | Tudor/PWWP/MBT | At1g80810 | S to L |
—, Indicate that there is no annotated genes or amino acid changes.