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. 2016 Apr 25;113(19):5447–5452. doi: 10.1073/pnas.1522458113

Table S2.

Summary of high-throughput RNA sequencing analysis

Library Total reads Total matches (% of total)* Reads mapped to splice junctions (% of total) Unique matches (% of total matches) Multiple matches (% of total matches) Coverage of intron-containing genes (RPKM > 3)§ Coverage of genes (RPKM > 3)§
Col 29,505,966 27,908,233 (94.6%) 8,769,813 (29.5%) 27,440,647 (98.3%) 467,586 (1.7%) 13,308 15,300
atprmt5-2 31,472,542 29,483,401 (93.7%) 9,334,131 (29.5%) 28,919,312 (98.1%) 564,089 (1.9%) 13,345 15,225
atprmt5-2 prp8-8 30,418,678 28,703,813 (94.3%) 8,948,627 (29.3%) 28,170,586 (98.1%) 533,227 (1.9%) 13,178 15,077
atprmt5-1 prp8-9 30,146,556 28,116,182 (93.3%) 8,427,608 (27.9%) 27,669,011 (98.4%) 447,171 (1.6%) 12,254 13,915

RPKM, reads per kilobase per million mapped reads.

*

Number of reads that aligned to the A. thaliana genome and annotated splicing junction sequences.

Number of reads that aligned to a unique location of the TAIR9 reference genome.

Number of mapped reads that aligned to more than one genomic location.

§

Number of intron-containing genes covered by the unique reads (>3 RPKM).