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. Author manuscript; available in PMC: 2016 May 17.
Published in final edited form as: J Proteome Res. 2015 Jul 21;14(9):3555–3567. doi: 10.1021/acs.jproteome.5b00264

Figure 1.

Figure 1

(a) Diagram of our proteogenomic pipeline. The proposed pipeline used in this method integrates database creation, spectra search, and event-level analysis. (b) Illustration of proteogenomic database construction for immunoglobulin peptide identifications. (c) Diagram illustrating the peptide identifications of V(D)J recombination junctions. We identified clusters of peptides in the immunoglobulin region that connect various V(D)J segments. Examples of immunoglobulin rearrangement peptide identifications plotted in the UCSC genome browser can be found in Figure S11.