Table 1.

Distribution and density of SNPs, InDels, and SVs identified between Four-row Wax and B73 maize.

Chromosome	SNPs	SNPs/Mb	InDels	InDels/Mb	Ins	Ins/Mb	Del	Del/Mb	SV	SV/Mb
Chr1	473,967	1,579	32,998	110	15,324	51	17,674	59	5,960	20
Chr2	386,104	1,645	23,981	102	11,111	47	12,870	55	4,580	20
Chr3	364,401	1,581	24,643	107	11,335	49	13,308	58	4,310	19
Chr4	424,860	1,719	24,735	100	11,214	45	13,521	55	4,890	20
Chr5	313,126	1,444	22,491	104	10,269	47	12,222	56	4,019	19
Chr6	249,643	1,475	17,063	101	7,681	45	9,382	55	3,025	18
Chr7	287,446	1,681	17,952	105	8,185	48	9,767	57	3,360	20
Chr8	273,747	1,569	17,799	102	8,301	48	9,498	54	3,325	19
Chr9	237,802	1,561	16,279	107	7,508	49	8,771	58	2,984	20
Chr10	227,839	1,522	14,643	98	6,689	45	7,954	53	2,655	18
Chr unknown1	13,259	903	597	41	211	14	386	26	523	36
Total	3,252,194	1,578	213,181	103	97,828	47	115,353	56	39,631	19

¹Chr unknown indicates unplaced or unlocalized contigs.