Table 1. RNA sequencing of A. niger wild type strain cultivated on D-glucuronate (D-glcUA) and D-galacturonate (D-galUA).
| Transcript level (FPKM) | |||||||
|---|---|---|---|---|---|---|---|
| Gene | JGI protein ID | Genomic location | D-glcUA |
D-galUA | Function/InterPro prediction | ||
| 0 h | 4 h | 20 h | 5 h | ||||
| gaaA | 1158309 | chr_402:1949209–1950762 | 77 | 1618 | 1371 | 2563 | D-galacturonate/D-glucuronate reductase |
| gaaB | 1186088 | chr_502:1524792–1526872 | 104 | 520 | 851 | 4714 | L-galactonate dehydratase |
| gaaC | 1145855 | chr_503:270465–271586 | 98 | 506 | 578 | 827 | 2-dehydro-3-deoxy-L-galactonate aldolase |
| gaaD | 1127092 | chr_701:333409–334937 | 241 | 670 | 1009 | 2887 | L-glyceraldehyde reductase |
| gar1 | 1108731 | chr_502:1395768–1397124 | 89 | 59 | 130 | 134 | Homolog of T. reesei D-galacturonate reductase |
| gatA | 1202517 | chr_102:1065966–1067890 | 6 | 184 | 177 | 391 | D-galacturonate transporter |
| gluC | 1220513 | chr_601:1159357–1160584 | 4 | 1285 | 645 | 9 | IPR006139: D-isomer specific 2-hydroxyacid DH |
| – | 1013899 | chr_304:170864–172922 | 1015 | 916 | 929 | 1213 | IPR004000: Actin/actin-like |
Transcript levels are presented as fragments per kilobase of exon per million fragments mapped (FPKM).