Table 3. Number of single nucleotide polymorphisms (SNPs) in the introgression regions.
| No. of SNPs in the introgressed regions* | Mean SNP no. in the introgressed regions‘ | ||
|---|---|---|---|
| Indica | Japonica | ||
| T1a | 347,426 | 458,296 | 26,731 |
| T1b | 393,367 | 523,397 | 31,548 |
| T1c | 399,390 | 509,259 | 31,225 |
| T2a | 193,099 | 271,877 | 13,314 |
| T2b | 276,047 | 422,045 | 31,592 |
| T3a | 321,813 | 528,347 | 41,565 |
| T3b | 319,522 | 504,645 | 39,842 |
The SNPs were compared with the Nipponbare RefSeq (IRGSP 1.0)
*: the introgression regions for each plant are listed in S6 Table.
‘: Indica: average number of SNPs for three modern varieties, IR64, TCS10 and TCS17. Japonica: average number of SNPs for three modern varieties, TNG67, TC65 and TK9.