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. 2015 Nov 30;11(1):e1074370. doi: 10.1080/15592324.2015.1074370

Table 1.

List of publically available Omics Data Repositories

Repository Web portal
DNA Data Bank of Japan (DDBJ) http://www.ddbj.nig.ac.jp/
European Molecular Biology Laboratory (EMBL) http://www.embl.org/
GenBank http://www.ncbi.nlm.nih.gov/genbank
PlantGDB http://www.plantgdb.org/
Gramene http://www.gramene.org/
Rice Genome Annotation Project http://rice.plantbiology.msu.edu/
Array Express http://www.ebi.ac.uk/arrayexpress/
Gene Expression Omnibus (GEO) http://www.ncbi.nlm.nih.gov/geo/
RiceXPro http://ricexpro.dna.affrc.go.jp/
Maize Genome Database http://www.maizegdb.org/
Botany Array Resource http://www.bar.utoronto.ca/
PLANEX http://www.planex.plantbioinformatics.org/
PLEXdb http://www.plexdb.org/
EGENES http://www.genome.jp/kegg-bin/create_kegg_menu?category=plants_egenes
Soybean database http://www.proteome.dc.affrc.go.jp/Soybean/
Stress- Genomics http://www.stress-genomics.org/
Plant Transcription Factor Database http://planttfdb.cbi.pku.edu.cn/
Stress Responsive Transcription Factor Database V2.0 http://caps.ncbs.res.in/stifdb2/
Plant Promoter Database ver 3.0 http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/index.cgi
Plant Proteome Database (PPBD) http://ppdb.tc.cornell.edu/
Proteomics Identifications Database (PRIDE) http://www.ebi.ac.uk/pride/archive/
Global Proteome Machine (GPMDB) http://www.gpmdb.thegpm.org/
ProteomicsDB http://www.proteomicsdb.org/
PeptideAtlas http://www.peptideatlas.org/
PlaPID http://www.plapid.net/
Plant Reactome http://plants.reactome.org/
PlantMetabolomics.org http://www.plantmetabolomics.org/
Plant Metabolome Database http://www.sastra.edu/scbt/pmdb/
Plant Metabolic Network (PMN) http://www.plantcyc.org/
MetNet online database http://www.metnetonline.org/
MetNet http://metnet.vrac.iastate.edu/
SIGnal http://signal.salk.edu/
Plant Omics Data Center http://www.bioinf.mind.meiji.ac.jp/podc/
Next- Gen Sequence Databases http://mpss.udel.edu/
Phenome Networks http://phnserver.phenome-networks.com/