Table 2. circRNA and its parental gene expression pattern in normal tissue and gliomas.
| Normal versus Glioblastoma | |||
|---|---|---|---|
| circRNA Expression pattern | mRNA Expression pattern | Gene name | Gene number |
| CPA (N > G) 468 | MPA (N > G) | CDR1;ATRNL1;AKT3;SPTAN1;ZNF483;RIMS1;FKBP8;UNC13C; NTRK2;GABRB2;CADPS2;NRXN1;GLS;DYNC1H1;PDE4DIP;CAMK4; PJA2;TIAM1;ATP9A;CLASP2;SYNE1; | 353 |
| MPB (N < G) | QKI;PSMA7;RHOBTB3;TMEM165;LIFR;CSNK1A1;VAMP3;CAPZA1; CORO1C;WBSCR22;PDE4B;NUP205;ZFAND6;BACH1;SLC30A7;ASXL1; TTC28;TNPO3;DHX34;NCOA3;DCUN1D4 | 22 | |
| MPC (N = G) | FAT1;MAN2A1;FAM208A;LZIC;PICALM;RBM39;CCDC9; QSER1;LPXN;PSMD5;DHDDS;PAN3;…… | 93 | |
| CPB (N < G) 8 | MPA (N > G) | / | 0 |
| MPB (N < G) | COL1A2;PTN;VCAN;PLOD2;SMO;GLIS3;EPHB4;. | 7 | |
| MPC (N = G) | CLIP2. | 1 | |
| CPC (N = G) | OPHN1;NCOR2;KANSL1L;MDM2;QKI;CHD7;RELL1;LPHN3;MAML2;NUP54; FKBP8;PSD3;SAMD4A;TBC1D1;LPHN3;;…… | 96 | |
| Normal versus Oligodendroglioma | |||
| CPA (N > O) 93 | MPA (N > O) | SPTAN1;RIMS1;AKT3;UNC13C;ZNF483;CADPS2;GLS;FKBP8;SYNE1; AKAP12;STXBP5L;DNAJC6;ANK3;SOGA2;PDE4DIP;ATP8A2; TTLL7;RPH3A……. | 65 |
| MPB (N < O) | PDE4B;SMAD5;LRP6;TDRD3. | 4 | |
| MPC (N = O) | PICALM;ANKRD36B;PHIP;CRKL;PPA2;USP24;ZBTB44;USP45;NTRK2; PSMB1;MGA;PTK2;KLHL24;MDN1;KLHL24;FGGY;CNOT2;RBM33; MIB1;PHF21A;RPAP2;SLC12A2; | 24 | |
| CPB (N < O) 20 | MPA (N > O) | TBCD | 1 |
| MPB (N < O) | SCARNA2;VCAN;ZBTB20;OPHN;AGXT2L1;MKLN1;AASS;NFIB;SOX6; LPHN3;LPHN3;TEX9;MTHFD2L;SMO;MAP3K1. | 15 | |
| MPC (N = O) | KDM4B;ZNF292;ZNF362;LDLRAD3. | 4 | |
| CPC (N = O) | MDM2;GLIS3;GLI1;CSMD2;COL1A2;ANKIB1;MAN2A1;CAMSAP1;CDK8;TBC1D1; UBR5;CUX1;PICALM;UBA2;DDX3Y;ARHGAP12;FAM208A;UBE3D;LZIC;CDK13;…… | 460 | |
CPA: circRNA expression pattern A (normal > tumor); CPB: circRNA expression pattern B (normal < tumor); CPC: circRNA expression pattern C (normal = tumor); MPA : parental mRNA expression pattern A (normal > tumor); MPB : parental mRNA expression pattern A (normal < tumor); MPC : parental mRNA expression pattern A (normal = tumor); normal > tumor means that circRNA or mRNA expression level is higher in normal than that in tumor tissue, normal < tumor means that circRNA or mRNA expression level is lower in normal than that in tumor tissue, normal < tumor means that there is no difference between normal and tumor tissue, the difference significance is tested by Wilcoxon rank-sum test and Benjamini–Hochberg correction (q < 0.05).