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. 2016 Apr 13;44(9):4005–4013. doi: 10.1093/nar/gkw229

Table 1. DNA sequences used to investigate DB270/DNA/PU.1 interactions.

Name Sequence Reference
λB 5′-GCGAATAAAAGGAAGTGAAACCG-3′ (20)
[5′]AGC 5′-GCGAATAAGCGGAAGTGAAACCG-3′ (23)
SC1 5′-CGGCCAAGCCGGAAGTGAGTGCC-3′ (24)
NS 5′-GCGAATAAGCGAGAGTGAAACCG-3′ (9)

Typical of members of the ETS family of transcription factors, PU.1 recognizes an array of sequences bearing a central 5′-GGAA-3′ consensus (in bold). High-affinity DNA binding sites for PU.1 in vivo also frequently harbor A-tracks, defined as four or more consecutive AT base pairs (18). AT-selective heterocyclic dications such as DB270 and DB1976 target A-tracks in sequences such as the λB motif (5), a natural PU.1 binding site in the murine Igλ2-4 enhancer. [5′]AGC is derived from the λB motif and has the highest reported affinity for PU.1. SC1 is a non-AT rich sequence that PU.1 recognizes in vitro, while NS is a sequence isomer of [5′]AGC in which the central consensus is mutated to the non-cognate 5′-GAGA-3′.