Table 1. DNA sequences used to investigate DB270/DNA/PU.1 interactions.
| Name | Sequence | Reference |
|---|---|---|
| λB | 5′-GCGAATAAAAGGAAGTGAAACCG-3′ | (20) |
| [5′]AGC | 5′-GCGAATAAGCGGAAGTGAAACCG-3′ | (23) |
| SC1 | 5′-CGGCCAAGCCGGAAGTGAGTGCC-3′ | (24) |
| NS | 5′-GCGAATAAGCGAGAGTGAAACCG-3′ | (9) |
Typical of members of the ETS family of transcription factors, PU.1 recognizes an array of sequences bearing a central 5′-GGAA-3′ consensus (in bold). High-affinity DNA binding sites for PU.1 in vivo also frequently harbor A-tracks, defined as four or more consecutive AT base pairs (18). AT-selective heterocyclic dications such as DB270 and DB1976 target A-tracks in sequences such as the λB motif (5), a natural PU.1 binding site in the murine Igλ2-4 enhancer. [5′]AGC is derived from the λB motif and has the highest reported affinity for PU.1. SC1 is a non-AT rich sequence that PU.1 recognizes in vitro, while NS is a sequence isomer of [5′]AGC in which the central consensus is mutated to the non-cognate 5′-GAGA-3′.