Table 3. Percentage of BI substates obtained with PARMBSC1 compared with PARMBSC0 and NMR experimentsa.
Bps | PARMBSC0 | PARMBSC1 | NMR1 | NMR2 |
---|---|---|---|---|
GC | 48 | 73 | 75 | 53 |
CG | 87 | 78 | 75 | 66 |
GA | 53 | 45 | 53 | 44 |
AA | 91 | 82 | 75 | 63 |
AT | 99 | 98 | 100 | 78 |
TT | 100 | 99 | 99 | 93 |
TC | 98 | 93 | 89 | 92 |
CG | 79 | 62 | 75 | 77 |
GC | 71 | 61 | 79 | 35 |
aBI percentage for the bps in the DD dodecamer, obtained by averaging the difference between ϵ and ζ angles at the 3′-junction of the Watson strand of each base pair. NMR1 and NMR2 are values obtained using phosphorus chemical shifts as detailed in the works of Schwieters et al. (NMR1 (80)) and Tian et al. (NMR2, (79)), respectively.