Table 3. Genes found to be consistently over-expressed in plants grown with supplemental N across three cultivars and two sampling dates.
| GeneID and Coordinates | Description and InterPro Domains$ | GO Terms° | E.C. Numbers and KEGG Pathways | |
|---|---|---|---|---|
| Sotub12g027600 chr12:64270939–64272220 | − | Whole genome shotgun assembly reference scaffold set scaffold scaffold_4 IPR012336 Thioredoxin-like fold | BP: CC: GO:0044444, GO:0043231 MF: | |
| Sotub02g033060 chr02:66207353–66223198 | + | NAD-dependent epimerase/dehydratase IPR016040 NAD(P)-binding domain | BP: GO:0044237 CC: GO:0016021,GO:0044444, GO:0043231 MF: GO:0050662,GO:0003824 | |
| Sotub10g014450 chr10:26464815–26466682 | − | Phenylcoumaran benzylic ether reductase 3 IPR008030 NmrA-like | BP: GO:0055114, GO:0046686, GO:0044237,GO:0006694 CC: GO:0005737 MF:GO:0000166, GO:0050662, GO:0003854 | E.C.: 1.3.1.45 |
| Sotub04g026530 chr04:53765574–53768766 | − | Peroxidase IPR002016 Haem peroxidase, plant/fungal/bacterial | BP: GO:0055114, GO:0042744 CC:GO:0009506, GO:0009505, GO:0005773,GO:0005576 MF: GO:0004601, GO:0020037 | E.C.: 1.11.1.7 |
| Sotub08g024220 chr08:39427772–39430543 | + | Inositol 2-dehydrogenase like protein IPR016040 NAD(P)-binding domain | BP: GO:0055114 CC: GO:0005576 MF:GO:0050112 | |
| Sotub08g007240 chr08:2517348–2519038 | + | Cation transport regulator-like protein 2 IPR006840 ChaC-like protein | BP: GO:0046686, GO:0010288 CC: MF: | |
| Sotub12g011100 chr12:5784211–5789157 | + | Aminotransferase-like protein IPR005814 Aminotransferase class-III | BP: GO:0010154, GO:0046686, GO:0006979,GO:0010183, GO:0010033, GO:0009865,GO:0009450, GO:0006540, GO:0019484 CC:GO:0005886, GO:0005739, GO:0009507 MF:GO:0030170, GO:0008270, GO:0050897,GO:0003992, GO:0034387 | |
| Sotub10g018540 chr10:43448319–43452146 | + | Aminotransferase like protein IPR005814 Aminotransferase class-III | BP: GO:0050896, GO:0009853 CC:GO:0005739 MF: GO:0030170, GO:0008453 | E.C.: 2.6.1.18 Pathways: pantothenate and coenzyme A biosynthesis II, β-alanine biosynthesis II E.C.: 2.6.1.44 Pathways: glycine biosynthesis III |
| Sotub08g014020 chr08:22405555–22412221 | + | Chalcone isomerase IPR016087 Chalcone isomerase | BP: CC: GO:0009570 MF: GO:0016872,GO:0005504 | |
| Sotub01g005580 chr01:427688–431987 | − | Glutamate decarboxylase IPR010107 Glutamate decarboxylase | BP: GO:0006536, GO:0046686 CC:GO:0005634, GO:0005829 MF: GO:0030170,GO:0004351, GO:0005516 | E.C.: 4.1.1.15 Pathways: glutamate degradation IV, glutamate degradation IX (via 4-aminobutyrate), glutamate dependent acid resistance |
| Sotub10g024560 chr10:49073980–49076488 | + | Glutathione S-transferase IPR004046 Glutathione S-transferase, C-terminal | BP: GO:0046686, GO:0009636 CC:GO:0005829 MF: GO:0005515, GO:0004364 | E.C.: 2.5.1.18 Pathways: glutathione-mediated detoxification II |
| Sotub06g008080 chr06:4763763–4768618 | − | Male sterility 5 family protein (Fragment) IPR011990 Tetratricopeptide-like helical | BP: CC: MF: GO:0005515 | |
| Sotub09g018850 chr09:37905080–37908059 | + | Male sterility 5 family protein (Fragment) IPR011990 Tetratricopeptide-like helical | BP: CC: MF: GO:0005515 | |
| Sotub01g022620 chr01:69840666–69841253 | − | Peptide methionine sulfoxide reductase msrB IPR002579 Methionine sulphoxide reductase B | BP: GO:0022900 CC: GO:0005829 MF:GO:0046872, GO:0033743, GO:0008113 | E.C.: 1.8.4.11 |
| Sotub05g024960 chr05:56803278–56805488 | − | Amino acid transporter IPR013057 Amino acid transporter, transmembrane | BP: GO:0006865 CC: GO:0016021 MF:GO:0003674 | |
| Sotub11g012150 chr11:6925093–6928544 | − | Amino acid transporter IPR013057 Amino acid transporter, transmembrane | BP: CC: GO:0005886, GO:0016021,GO:0005774 MF: GO:0015171 | |
| Sotub02g036900 chr02:69051466–69053337 | + | Cystine transporter Cystinosin IPR005282 Lysosomal cystine transporter | BP: GO:0006810 CC: GO:0005886, GO:0016021, GO:0005765 MF: | |
| Sotub09g024290 chr09:46805115–46809993 | − | Sulfate adenylyltransferase IPR002650 ATP-sulfurylase | BP: GO:0046686, GO:0001887, GO:0000103,GO:0070814 CC: GO:0005886, GO:0005739,GO:0009570 MF: GO:000552, GO:0004781 | E.C.: 2.7.7.4 Pathways: selenate reduction, sulfate reduction II (assimilatory), sulfate activation for sulfonation |
| Sotub04g021910 chr04:45794993–45803770 | + | Sulfate transporter IPR001902 Sulphate anion transporter | BP: GO:0055085, GO:0030003, GO:0019344,GO:0009684, GO:0019761, GO:0070838,GO:0008272 CC: GO:0016021 MF:GO:0015293, GO:0008271 | |
| Sotub04g027100 chr04:54585161–54588369 | − | High affinity sulfate transporter 2 PR001902 Sulphate anion transporter | BP: GO:0055085, GO:0009970, GO:0008272,GO:0080160 CC: GO:0005886, GO:0016021MF: GO:0015293, GO:0008271 | |
| Sotub10g013960 chr10:24455891–24459003 | − | High affinity sulfate transporter 2 IPR001902 Sulphate anion transporter | BP: GO:0055085, GO:0009970, GO:0008272,GO:0080160 CC: GO:0005886, GO:0016021MF: GO:0008271 | |
| Sotub08g005390 chr08:414965–419119 | + | Nitrate transporter IPR000109 TGF-beta receptor, type I/II extracellular region | BP: GO:0009414, GO:0010167, GO:0009734,GO:0009635, GO:0006857, GO:0042128 CC:GO:0005886, GO:0016021 MF: GO:0015112,GO:0015293 | |
| Sotub07g009860 chr07:6361828–6364633 | + | Peptide transporter IPR000109 TGF-beta receptor, type I/II extracellular region | BP: GO:0009987, GO:0015031, GO:0006807,GO:0006857 CC: GO:0016021, GO:0009506MF: GO:0042937, GO:0042936 | |
| Sotub01g049270 chr01:96560230–96568031 | − | Tyrosine-protein kinase transforming protein Src IPR015783 ATMRK serine/threonine protein kinase-like | BP: GO:0006468 CC: GO:0016597,GO:0005524, GO:0004674, GO:0004715 MF: | |
| Sotub03g018720 chr03:24381058–24384772 | + | Alpha-glucosidase-like IPR000322 Glycoside hydrolase, family 31 | BP: GO:0005975 CC: GO:0030246,GO:0032450 MF: | |
| Sotub01g023000 chr01:70600749–70601999 | + | Xylanase inhibitor (Fragment) IPR001461 Peptidase A1 | BP: GO:0006508 CC: GO:0004190 MF: | |
| Sotub11g007110 chr11:2283766–2284773 | + | Plant-specific domain TIGR01615 family protein IPR006502 Protein of unknown function DUF506, plant | BP: CC: MF: | |
| Sotub11g007090 chr11:2266700–2267713 | + | Plant-specific domain TIGR01615 family protein IPR006502 Protein of unknown function DUF506, plant | BP: CC: MF: | |
| Sotub04g023170 chr04:484 12542–48413816 | + | Unknown Protein | BP: CC: MF: | |
| Sotub03g017290 chr03:22560550–22560888 | − | Unknown Protein | BP: CC: MF: |
$Gene descriptions (including InterPro domains) obtained from the ITAG1.0 annotation system11. Strand: plus (+) or minus (−).
°BP: Biological Process; CC: Cell Component; MF: Molecular function.