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. 2016 Mar 29;6(3):e764. doi: 10.1038/tp.2016.30

Table 1. Summary of confirmed de novo SNVs from exome sequencing in 17 OCD parent trios.

Individual Chr Position (hg19) Gene Expression
Reference allele Variant allele Variant effect Amino acid substitution RVIS (%ile) ExAC frequency Detection pipeline
        Brain Synaptic              
OCD016301 15 75891017 SNUPN Yes No A C Missense D255E 0.6 (82.66%) NA Both
OCD018901 3 10380029 ATP2B2 Yes Yes A G Missense I1084T −1.94 (1.89%) NA Both
OCD018901 3 180703745 DNAJC19 Yes Yes T C Silent R83R −0.08 (47.79%) NA SAMtools
OCD032201 2 219647088 CYP27A1 Yes No A T Silent P61P −0.31 (32.23%) NA SAMtools
OCD032201 8 87423972 WWP1 Yes Yes A G Missense I310M −0.69 (15.12%) 8.2 × 106 Both
OCD032201 10 50678378 ERCC6 Yes No T A Nonsense K1210X 1.49 (95.32%) NA Both
OCD032201 11 62400166 GANAB Yes No C T Silent L311L −0.66 (16.02%) NA SAMtools
OCD129101 2 219894325 CCDC108 Yes No C T Missense E484K −1.85 (2.04%) 8.2 × 10−6 Both
OCD129101 4 102993556 BANK1 Yes No A T Missense K633M 0.45 (78%) NA Both
OCD129101 5 16783451 MYO10 Yes No C T Missense E199K −1.61 (2.97%) NA Both
OCD139801 1 89655829 GBP4 Yes No C A Silent T363T 1.76 (96.73%) NA SAMtools
OCD139801 1 177226291 FAM5B Yes No C G Missense NA −1.15 (6.27%) NA Both
OCD139801 1 207755290 CR1 No No T A Missense S1748R NA NA Both
OCD139801 2 223423326 SGPP2 Yes No C T Silent P303P −0.6 (17.91%) 1.7 × 10−5 SAMtools
OCD144601 2 220402768 ACCN4 Yes No G A Silent X667X 0.4 (76.45%) 1.1 × 10−5 SAMtools
OCD144601 X 8138284 VCX2 Yes No G C Missense A70G NA 0.793 Both
OCD175901 16 11016048 CIITA Yes No C T Silent D1058D −0.89 (10.19%) 4.1 × 10−5 SAMtools
OCD175901 16 71807129 AP1G1 Yes Yes T C Missense K155E −0.76 (13.45%) NA Both
OCD181401 10 28971325 BAMBI Yes No G A Missense V260I −0.12 (45.13%) 8.24 × 10−6 Both
OCD176501 16 15790756 NDE1 Yes No A C Missense A986C −0.82 (11.77%) 0.0003 GATK
OCD018901 18 48584826 SMAD4 Yes No T C Missense W302R −0.32 (31.69%) NA GATK
OCD020001 11 1270892 MUC5B Yes No C A Missense A4261E 16.52 (99.98%) 0.001 GATK
OCD003301 X 11206984 ARHGAP6 Yes No G A Missense S134F −0.56 (19.73%) 0.008 GATK
OCD043301 14 21870199 CHD8 Yes No C T Missense E1327K −2.34 (1.18%) NA GATK
OCD048501 4 146033407 ABCE1 Yes No C G Missense P243A −0.25 (35.42%) 0.003 GATK
OCD048501 8 11188956 SLC35G5 Yes Yes G A Missense S114N 1.36 (94.44%) 8.2 × 10−6 GATK
OCD048501 11 18266989 SAA2 Yes No T C Missense K102E 0.73 (85.98%) 9.9 × 10−5 GATK

Abbreviations: Chr, chromosome; ExAC Frequency, overall variant frequencies in version 0.3 of the Exome Aggregation Consortium data set; NA, not present in data set; OCD, obsessive-compulsive disorder; RVIS, Residual Variation Intolerance Score, release 9 (http://genetic-intolerance.org, accessed December 1, 2015); SNV, single-nucleotide variant.