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Manhattan plot of all markers from the Immunochip. Each dot represents the PGC value of association analysis [−log10(PGC)] on the y-axis and position in chromosome on the x-axis (PGC is genomic-controlled P value). (Top) Löfgren’s syndrome (LS) versus control subjects and (bottom) non-LS versus control subjects. Red line indicates PGC < 5 × 10−8; blue line is PGC < 5 × 10−5. HC = healthy control subjects.
