Table 3. Evolutionary rate analysis of cotton leaf curl geminiviruses.
| Virus name | Demographic/clock model | Mean Rate | 95% High posterior density (HPD) | CP1! Mutation rate | CP2 Mutation rate | CP3 Mutation rate | No of Taxa |
|---|---|---|---|---|---|---|---|
| CLCuAlV/BYVMV-CP | GTR+Gamma/Strict | 4.761X10-4 | 1.65X10-4–7.85X10-4 | 0.306 | 0.289 | 2.405 | 77 |
| CLCuAlV/BYVMV-CP | GTR+Gamma/Relaxed | 7.265X10-4 | 1.40X10-4–1.35X10-3 | 0.289 | 0.272 | 2.439 | 77 |
| CLCuKoV-CP | GTR+Gamma/Strict | 9.70X10-5 | 6.62X10-6–1.35X10-4 | 0.54 | 0.85 | 1.61 | 44 |
| CLCuKoV-CP | GTR+Gamma/Relaxed | 2.706X10-4 | 2.801X10-6–1.207X10-3 | 0.54 | 0.85 | 1.61 | 44 |
| CLCuKoV-Rep | GTR+Gamma/Relaxed | 9.05X10-4 | 3.96 X 10−4–1.45X10-3 | 0.924 | 0.724 | 1.35 | 30 |
| CLCuMuV-Rep | GTR+Gamma/Relaxed | 4.96X10-4 | 7.64X10-4–2.45X10-4 | 0.821 | 0.572 | 1.607 | 53 |
| CLCuMuV-CP* | BSP/Relaxed | 4.24X10-4 | - | 1.64 | 0.449 | 0.909 | 19 |
| GDarSLA-Rep* | BSP/Relaxed | 2.13X10-3 | - | 1.4 | 0.765 | 0.831 | 63 |
| CLCuMuB- βC1* | BSP/Relaxed | 3.51X10-3 | - | 0.85 | 0.73 | 1.43 | 39 |
| EACMV-CP** | BSP/Relaxed | 1.37X10-3 | - | - | - | - | 71 |
| TYLCV-CP*** | Relaxed+Exponential | 4.63X10-4 | - | - | - | - | 54 |
! codon position (CP)
* Nawaz-ul-Rehman et al., 2012.
** Duffy and Holmes, 2009.
*** Lefeuvre et.al 2010.