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. Author manuscript; available in PMC: 2017 Jun 1.
Published in final edited form as: Clin Genet. 2016 Jan 20;89(6):719–723. doi: 10.1111/cge.12702

Table 1.

Computational and predicted functional effect of FBN1 variants identified in patients with FTAAD.

Family ID TAA258 TAA321 TAA345 TAA394 TAA748 TAA289 TAA289 TAA620 TAA662 TAA662 TAA682 TAA698 TAA760
Nucleotide
change
c.813
C>G
c.6866
G>T
c.7039_7040
delAT
c.4467
T>A
c.7656
C>A
c.185
G>A
c.6596
G>A
c.2093
C>T
c.8121
C>A
c.3797
A>T
c.3428
G>A
c.4270
C>G
c.2207
A>G
Amino acid
substitution
p.C271W p.C2289F p.M2347V
fs*19
p.N1489K p.C2552* p.R62H p.G2199D p.P698L p.D2707E p.Y1266F p.G1143D p.P1424A p.N736S
Variant type missense missense deletion missense nonsense missense missense missense missense missense missense missense missense
Exon 7 55 57 36 61 2 53 16 64 30 27 34 18
Domain EGF-like
#4
EGF-like
#35
TGFBP 7 EGF-like
#26
EGF-like
#40
4-cysteine
motif
EGF-like
#33
TB3 - EGF-like
#20
EGF-like
#13
EGF-like
#24
EGF-like
#7
phyloPa 6.519 7.8 0.731 1.67 3.619 7.818 9.869 1.286 1.748 7.275 6.523 7.698
phastConsb 1 1 0.997 1 1 1 1 1 1 1 1 1
GERPc 4.48 5.8 2.15 3.84 3.26 6.07 6.06 5.38 2.28 5.6 5.81 4.79
CADDd 25.3 35 24.5 49 28.8 34 26.3 16.97 16.71 32 23.3 24.6
FATHMMe D D D D D D T D D D D
LRTf D D D D N D D D N D D D
Mutation
Assessorg
H H M M N L N N M L M
Mutation
Tasterh
D D D A D D D D D D D D
Polyphen2i D D P D D D B B D P P
SIFTj D D D D D T T T D D D
ExAC All
MAFk
0.0000082 0 0 0 0 0.0000584 0 0.0000082 0 0.0000989 0 0.0001812 0
Variant
classification
Pathogenic Pathogenic Pathogenic Pathogenic Pathogenic Uncertain
significance
Uncertain
significance
Likely
benign
Uncertain
significance
Uncertain
significance
Uncertain
significance
Uncertain
significance
Likely
benign
a

PhyloP score: evolutionary conservation score, higher score indicates more conserved site;

b

PhastCons: evolutionary conservation score ranges from 0 to 1, with 1 being most conserved;

c

GERP: evolutionary conservation score, higher score indicates more conserved site (17);

d

CADD: (18);

e

FATHMM: D=damaging, T=tolerated, (17);

f

LRT: D=deleterious, N=neutral, (19);

g

Mutation Assessor: H=functional, high, M=functional, medium, L=non-functional, low, N=non-functional, neutral, (20);

h

Mutation Taster: A=disease-causing automatic, D=disease-causing, (21);

i

PolyPhen-2 HVAR: D=probably damaging, P=possibly damaging, B=benign, (22);

j

SIFT: D=damaging, T=tolerated, (23);

k

MAF: minor allele frequency in all populations in the Exome Aggregation Consortium (ExAC) database.