Skip to main content
. Author manuscript; available in PMC: 2017 Jun 30.
Published in final edited form as: J Comput Chem. 2016 Mar 24;37(17):1559–1564. doi: 10.1002/jcc.24370

Figure 1.

Figure 1

An example of the TF-small molecule complex: Peroxisome proliferator-activated receptor γ (PPAR γ) complexed with DNA (PDB id: 3DZU). The heterodimer of the TF is plotted in ribbon diagram (orange). Each TF consists of a DBD and a LBD. The two DBDs bind to a sequence-specific DNA (blue). The two LBDs bind with two small molecules, represented in surface diagram (magenta), and two co-regulators, shown in ribbon diagram (cyan). The figure is created by the Chimera program.[14]