Table 1. Bacterial strains used in this study and comparison of the two conventional PCR methods.
Species | Strains | PCR results | |||
---|---|---|---|---|---|
16S rRNA | BaSS | Realtime PCR | |||
Brucella species | |||||
B. abortus bv. 1 (544) | ATCC 23448 | + | + | + | |
B. abortus bv. 2 (86/8/59) | ATCC 23449 | + | + | + | |
B. abortus bv. 3 (Tulya) | ATCC 23450 | + | ±a) | + | |
B. abortus bv. 4 (292) | ATCC 23451 | + | + | + | |
B. abortus bv. 5 (B3196) | ATCC 23452 | + | ± | + | |
B. abortus bv. 6 (870) | ATCC 23453 | + | ± | + | |
B. abortus bv. 9 (C68) | ATCC 23455 | + | ± | + | |
B. canis (RM6/66) | ATCC 23365 | + | ± | – | |
B. suis bv. 1 (1330) | ATCC 23444 | + | ± | – | |
B. suis bv. 2 (Thomsen) | ATCC 23445 | + | ± | – | |
B. suis bv. 3 (686) | ATCC 23446 | + | ± | – | |
B. suis bv. 4 (40) | ATCC 23447 | + | ± | – | |
B. suis bv. 5 (513) | NCTC 11996 | + | ± | – | |
B. ovis (63/290) | ATCC 25840 | + | ± | – | |
B. neotomae (5K33) | ATCC 23459 | + | ± | – | |
B. melitensis bv. 1 (16M) | ATCC 23456 | + | ± | – | |
B. melitensis bv. 2 (63/9) | ATCC 23457 | + | ± | – | |
B. melitensis bv. 3 (Ether) | ATCC 23458 | + | ± | – | |
B. ceti (B1/94) | NCTC 12891 | + | ± | – | |
B. pinnipedialis (B2/94) | NCTC 12890 | + | ± | – | |
B. microti (CCM 4915) | BCCN 07-01 | + | ± | – | |
B. inopinata (B01) | BCCN 09-01 | + | ± | – | |
Mongolian B. abortus | 16 isolates | + | ± | + | |
Mongolian B. melitensis | 94 isolates | + | ± | – | |
Korean B. abortus | 84 isolates | + | + | + | |
Korean B. canis | 72 isolates | + | ± | – | |
Non-Brucella organisms | |||||
Ochrabactrum anthropi | Field strain | + | – | – | |
Escherichia coli O157:H7 | Field strain | – | – | – | |
Pasteurella multocida | ATCC 43017 | – | – | – | |
Salmonella Typhimurium | ATCC 14028 | – | – | – | |
Campylobacter jejuni | ATCC 33560 | – | – | – | |
Yersinia enterocolitica O:9 | NCTC 11174 | – | – | – | |
Staphylococcus aureus | Field strain | + | – | – | |
Clostridium perfringens type A | ATCC 13124 | – | – | – |
±a): They were identified with Brucella spp. showing two amplified products (180 bp and 800 bp).