Abstract
Using directed mutagenesis and phage display on a soluble fragment of the human immunoglobulin super-family receptor ILT2 (synonyms: LIR1, MIR7, CD85j), we have selected a range of mutants with binding affinities enhanced by up to 168,000-fold towards the conserved region of major histocompatibility complex (MHC) class I molecules. Produced in a dimeric form, either by chemical cross-linking with bivalent polyethylene glycol (PEG) derivatives or as a genetic fusion with human IgG Fc-fragment, the mutants exhibited a further increase in ligand-binding strength due to the avidity effect, with resident half-times (t 1/2) on the surface of MHC I-positive cells of many hours. The novel compounds antagonized the interaction of CD8 co-receptor with MHC I in vitro without affecting the peptide-specific binding of T-cell receptors (TCRs). In both cytokine-release assays and cell-killing experiments the engineered receptors inhibited the activation of CD8+ cytotoxic T lymphocytes (CTLs) in the presence of their target cells, with subnanomolar potency and in a dose-dependent manner. As a selective inhibitor of CD8+ CTL responses, the engineered high affinity ILT2 receptor presents a new tool for studying the activation mechanism of different subsets of CTLs and could have potential for the development of novel autoimmunity therapies.
Keywords: CD8+ T cells, cellular activation, autoimmunity, cell surface molecules, binding affinity, phage display
Footnotes
These authors contributed equally to this work.
References
- Bernardeau K., Gouard S., David G., Ruellan A.L., Devys A., Barbet J., Bonneville M., Cherel M., Davodeau F. Assessment of CD8 involvement in T cell clone avidity by direct measurement of HLA-A2/Mage3 complex density using a high-affinity TCR like monoclonal antibody. Eur J Immunol. 2005;35:2864–2875. doi: 10.1002/eji.200526307. [DOI] [PubMed] [Google Scholar]
- Binstadt B.A., Brumbaugh K.M., Dick C.J., Scharenberg A.M., Williams B.L., Colonna M., Lanier L.L., Kinet J.P., Abraham R.T., Leibson P.J. Sequential involvement of Lck and SHP-1 with MHC-recognizing receptors on NK cells inhibits FcRinitiated tyrosine kinase activation. Immunity. 1996;5:629–638. doi: 10.1016/S1074-7613(00)80276-9. [DOI] [PubMed] [Google Scholar]
- Borges L., Cosman D. LIRs/ILTs/MIRs, inhibitory and stimulatory Ig-superfamily receptors expressed in myeloid and lymphoid cells. Cytokine Growth Factor Rev. 2000;11:209–217. doi: 10.1016/S1359-6101(00)00007-1. [DOI] [PubMed] [Google Scholar]
- Buslepp J., Kerry S.E., Loftus D., Frelinger J.A., Appella E., Collins E.J. High affinity xenoreactive TCR:MHC interaction recruits CD8 in absence of binding to MHC. J Immunol. 2003;170:373–383. doi: 10.4049/jimmunol.170.1.373. [DOI] [PubMed] [Google Scholar]
- Cella M., Nakajima H., Facchetti F., Hoffmann T., Colonna M. ILT receptors at the interface between lymphoid and myeloid cells. Curr Top Microbiol Immunol. 2000;251:161–166. doi: 10.1007/978-3-642-57276-0_20. [DOI] [PubMed] [Google Scholar]
- Chang H.C., Tan K., Hsu Y.M. CD8alphabeta has two distinct binding modes of interaction with peptide-major histocompatibility complex class I. J Biol Chem. 2006;281:28090–28096. doi: 10.1074/jbc.M604931200. [DOI] [PubMed] [Google Scholar]
- Chapman T.L., Heikema A.P., West A.P., Jr, Bjorkman P.J. Crystal structure and ligand binding properties of the D1D2 region of the inhibitory receptor LIR-1 (ILT2) Immunity. 2000;13:727–736. doi: 10.1016/S1074-7613(00)00071-6. [DOI] [PubMed] [Google Scholar]
- Clackson T., Hoogenboom H.R., Griffiths A.D., Winter G. Making antibody fragments using phage display libraries. Nature. 1991;352:624–628. doi: 10.1038/352624a0. [DOI] [PubMed] [Google Scholar]
- Cole D.K., Rizkallah P.J., Sami M., Lissin N.M., Gao F., Bell J.I., Boulter J.M., Glick M., Vuidepot A.L., Jakobsen B.K., et al. Crystallization and preliminary X-ray structural studies of a high-affinity CD8alphaalpha co-receptor to pMHC. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005;61:285–287. doi: 10.1107/S1744309105002988. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Colonna M., Navarro F., Bellon T., Llano M., Garcia P., Samaridis J., Angman L., Cella M., Lopez-Botet M. A common inhibitory receptor for major histocompatibility complex class I molecules on human lymphoid and myelomonocytic cells. J Exp Med. 1997;186:1809–1818. doi: 10.1084/jem.186.11.1809. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Dunn S.M., Rizkallah P.J., Baston E., Mahon T., Cameron B., Moysey R., Gao F., Sami M., Boulter J., Li Y., et al. Directed evolution of human T cell receptor CDR2 residues by phage display dramatically enhances affinity for cognate peptide-MHC without increasing apparent cross-reactivity. Protein Sci. 2006;15:710–721. doi: 10.1110/ps.051936406. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Fanger N.A., Borges L., Cosman D. The leukocyte immunoglobulin-like receptors (LIRs): a new family of immune regulators. J Leukoc Biol. 1999;66:231–236. doi: 10.1002/jlb.66.2.231. [DOI] [PubMed] [Google Scholar]
- Fee C.J., Van Alstine J.M. Prediction of the viscosity radius and the size exclusion chromatography behavior of PEGylated proteins. Bioconjug Chem. 2004;15:1304–1313. doi: 10.1021/bc049843w. [DOI] [PubMed] [Google Scholar]
- Gaberc-Porekar V., Zore I., Podobnik B., Menart V. Obstacles and pitfalls in the PEGylation of therapeutic proteins. Curr Opin Drug Discov Devel. 2008;11:242–250. [PubMed] [Google Scholar]
- Gao G.F., Jakobsen B.K. Molecular interactions of coreceptor CD8 and MHC class I: the molecular basis for functional coordination with the T-cell receptor. Immunol Today. 2000;21:630–636. doi: 10.1016/S0167-5699(00)01750-3. [DOI] [PubMed] [Google Scholar]
- Garboczi D.N., Hung D.T., Wiley D.C. HLA-A2-peptide complexes: refolding and crystallization of molecules expressed in Escherichia coli and complexed with single antigenic peptides. Proc Natl Acad Sci USA. 1992;89:3429–3433. doi: 10.1073/pnas.89.8.3429. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hamerman, J.A., and Lanier, L.L. (2006). Inhibition of immune responses by ITAM-bearing receptors. Sci STKE 2006, re1. [DOI] [PubMed]
- Ivashkiv L.B. Cross-regulation of signaling by ITAM-associated receptors. Nat Immunol. 2009;10:340–347. doi: 10.1038/ni.1706. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kerry S.E., Buslepp J., Cramer L.A., Maile R., Hensley L.L., Nielsen A.I., Kavathas P., Vilen B.J., Collins E.J., Frelinger J.A. Interplay between TCR affinity and necessity of coreceptor ligation: high-affinity peptide-MHC/TCR interaction overcomes lack of CD8 engagement. J Immunol. 2003;171:4493–4503. doi: 10.4049/jimmunol.171.9.4493. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Laugel B., Price D.A., Milicic A., Sewell A.K. CD8 exerts differential effects on the deployment of cytotoxic T lymphocyte effector functions. Eur J Immunol. 2007;37:905–913. doi: 10.1002/eji.200636718. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Lepin E.J., Bastin J.M., Allan D.S., Roncador G., Braud V.M., Mason D.Y., van der Merwe P.A., McMichael A.J., Bell J.I., Powis S.H., et al. Functional characterization of HLA-F and binding of HLA-F tetramers to ILT2 and ILT4 receptors. Eur J Immunol. 2000;30:3552–3561. doi: 10.1002/1521-4141(200012)30:12<3552::AID-IMMU3552>3.0.CO;2-L. [DOI] [PubMed] [Google Scholar]
- Li Y., Moysey R., Molloy P.E., Vuidepot A.L., Mahon T., Baston E., Dunn S., Liddy N., Jacob J., Jakobsen B.K., et al. Directed evolution of human T-cell receptors with picomolar affinities by phage display. Nat Biotechnol. 2005;23:349–354. doi: 10.1038/nbt1070. [DOI] [PubMed] [Google Scholar]
- McCafferty J., Griffiths A.D., Winter G., Chiswell D.J. Phage antibodies: filamentous phage displaying antibody variable domains. Nature. 1990;348:552–554. doi: 10.1038/348552a0. [DOI] [PubMed] [Google Scholar]
- McNicol A.M., Bendle G., Holler A., Matjeka T., Dalton E., Rettig L., Zamoyska R., Uckert W., Xue S.A., Stauss H.J. CD8alpha/alpha homodimers fail to function as co-receptor for a CD8-dependent TCR. Eur J Immunol. 2007;37:1634–1641. doi: 10.1002/eji.200636900. [DOI] [PubMed] [Google Scholar]
- Natarajan K., Dimasi N., Wang J., Mariuzza R.A., Margulies D. H. Structure and function of natural killer cell receptors: multiple molecular solutions to self, nonself discrimination. Annu Rev Immunol. 2002;20!:853–885. doi: 10.1146/annurev.immunol.20.100301.064812. [DOI] [PubMed] [Google Scholar]
- Navarro F., Llano M., Bellon T., Colonna M., Geraghty D.E., Lopez-Botet M. The ILT2(LIR1) and CD94/NKG2A NK cell receptors respectively recognize HLA-G1 and HLA-E molecules co-expressed on target cells. Eur J Immunol. 1999;29:277–283. doi: 10.1002/(SICI)1521-4141(199901)29:01<277::AID-IMMU277>3.0.CO;2-4. [DOI] [PubMed] [Google Scholar]
- Roberts M.J., Bentley M.D., Harris J.M. Chemistry for peptide and protein PEGylation. Adv Drug Deliv Rev. 2002;54:459–476. doi: 10.1016/S0169-409X(02)00022-4. [DOI] [PubMed] [Google Scholar]
- Saverino D., Fabbi M., Ghiotto F., Merlo A., Bruno S., Zarcone D., Tenca C., Tiso M., Santoro G., Anastasi G., et al. The CD85/LIR-1/ILT2 inhibitory receptor is expressed by all human T lymphocytes and down-regulates their functions. J Immunol. 2000;165:3742–3755. doi: 10.4049/jimmunol.165.7.3742. [DOI] [PubMed] [Google Scholar]
- Sewell A.K., Gerth U.C., Price D.A., Purbhoo M.A., Boulter J.M., Gao G.F., Bell J.I., Phillips R.E., Jakobsen B.K. Antagonism of cytotoxic T-lymphocyte activation by soluble CD8. Nat Med. 1999;5:399–404. doi: 10.1038/7398. [DOI] [PubMed] [Google Scholar]
- Veronese F.M., Mero A. The impact of PEGylation on biological therapies. BioDrugs. 2008;22:315–329. doi: 10.2165/00063030-200822050-00004. [DOI] [PubMed] [Google Scholar]
- Willcox B.E., Gao G.F., Wyer J.R., O’Callaghan C.A., Boulter J.M., Jones E.Y., van der Merwe P.A., Bell J.I., Jakobsen B.K. Production of soluble alphabeta T-cell receptor heterodimers suitable for biophysical analysis of ligand binding. Protein Sci. 1999;8:2418–2423. doi: 10.1110/ps.8.11.2418. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Willcox B.E., Thomas L.M., Bjorkman P.J. Crystal structure of HLA-A2 bound to LIR-1, a host and viral major histocompatibility complex receptor. Nat Immunol. 2003;4:913–919. doi: 10.1038/ni961. [DOI] [PubMed] [Google Scholar]
- Willcox B.E., Thomas L.M., Chapman T.L., Heikema A.P., West A. P., Jr, Bjorkman P.J. Crystal structure of LIR-2 (ILT4) at 1.8 A: differences from LIR-1 (ILT2) in regions implicated in the binding of the Human Cytomegalovirus class I MHC homolog UL18. BMC Struct Biol. 2002;2:6. doi: 10.1186/1472-6807-2-6. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wyer J.R., Willcox B.E., Gao G.F., Gerth U.C., Davis S.J., Bell J.I., van der Merwe P.A., Jakobsen B.K. T cell receptor and coreceptor CD8 alphaalpha bind peptide-MHC independently and with distinct kinetics. Immunity. 1999;10:219–225. doi: 10.1016/S1074-7613(00)80022-9. [DOI] [PubMed] [Google Scholar]
- Zhang Y., Liu Y., Moxley K.M., Golden-Mason L., Hughes M.G., Liu T., Heemskerk M.H., Rosen H.R., Nishimura M.I., Gale M. Transduction of human T cells with a novel T-cell receptor confers anti-HCV reactivity. PLoS Pathog. 2010;6:e1001018. doi: 10.1371/journal.ppat.1001018. [DOI] [PMC free article] [PubMed] [Google Scholar]