Table 3.
Summary of SNP and CCNV analyses
| Isolate group | CCNV categorya | Isolate | Colony phenotype | Reference isolate | # CCNV regions (mean size bp) |
|---|---|---|---|---|---|
| NA1 | Normal Euploid | MK649b (wt, bay) | wt | used as ref. | n/a |
| Normal Euploid | Pr-1556 (wt, bay) | wt | used as ref. | n/a | |
| Normal Euploid | Pr-710 (wt, bay) | wt | used as ref. | n/a | |
| Normal Euploid | Pr-745 (wt, bay) | wt | used as ref. | n/a | |
| Normal Euploid | Pr-745#1 (wt, bay- > oak) | wt | Pr-710 | 0 (0) | |
| Normal Euploid | MK548 (wt, bay) | wt | MK649b | 4 (2,625) | |
| Normal Euploid | MK79j (wt, bay) | wt | Pr-710 | 4 (4,350) | |
| Normal Euploid | Pr-1556#2 (wt, bay- > race tube) | wt | Pr-710 | 6 (2,932) | |
| Normal Euploid | MK106 (wt, oak) | wt | MK649b | 8 (2,211) | |
| Normal Euploid | Pr-710#1 (wt, bay- > oak) | wt | Pr-710 | 9 (3,580) | |
| Normal Euploid | MK649a (wt, bay) | wt | Pr-710 | 10 (3,732) | |
| Normal Euploid | ND886_UC#1 (wt, camellia- > bay) | wt | Pr-1556 | 10 (2,360) | |
| Normal Euploid | MK516d (wt, oak) | wt | Pr-710 | 11 (2,285) | |
| Normal Euploid | ND886_QA#7 (wt, camellia- > oak) | wt | MK649b | 11 (3,045) | |
| Normal Euploid | Pr-1556#7 (wt, bay- > oak) | wt | MK649b | 12 (1,350) | |
| Normal Euploid | MK558 (wt, oak) | wt | MK649b | 26 (1,050) | |
| Normal Euploid | ND886_QA#9 (wt, camellia- > oak) | wt | Pr-1556 | 20 (5,450) | |
| 2x cnLOH | MK516a (nwt, oak) | nwt | Pr-1556 | 287 (3,876) | |
| 1x CCNV | Pr-140.9 (wt, oak) | wt | Pr-1556 | 218 (8,598) | |
| CCNV heterokaryon | Pr-745#4 (nwt, bay- > oak) | nwt | Pr-1556 | 171 (15,536) | |
| CCNV heterokaryon | Pr-140.7 (nwt, oak) | nwt | Pr-1556 | 256 (11,375) | |
| CCNV heterokaryon | Pr-1556#7#1 (nwt, bay- > oak- > race tube) | nwt | Pr-1556 | 271 (41,465) | |
| 3x CCNV | Pr-102_UC#4 (wt, oak- > bay) | wt | Pr-1556 | 114 (27,238) | |
| 3x CCNV | Pr-102 (nwt, oak) | nwt | Pr-745 | 215 (14,358) | |
| 3x CCNV | Pr-745#3 (nwt, bay- > oak) | nwt | Pr-745 | 339 (17,271) | |
| 3x CCNV + 2x cnLOH | Pr-16 (nwt, oak) | nwt | Pr-745 | 903 (5,924) | |
| CCNV generationb | Normal Euploid | Pr-1556 (wt, bay) | wt | used as ref. | n/a |
| Normal Euploid | Pr-1556#2 (wt, bay- > race tube) | wt | Pr-710 | 6 (2,932) | |
| Normal Euploid | Pr-1556#7 (wt, bay- > oak) | wt | MK649b | 12 (1,350) | |
| CCNV heterokaryon | Pr-1556#7#1 (nwt, bay- > oak- > race tube) | nwt | Pr-1556 | 271 (41,465) | |
| EU1c | CCNV heterokaryon | P2363 (wt, C. lawsoniana), middle of the lesion | wt | Pr-1556 | 2,060 (5,105) |
| CCNV heterokaryon | P2346 (nwt, C. lawsoniana), bottom of the lesion | nwt | P2363 | 473 (21,500) | |
| CCNV heterokaryon | P2386 (nwt, C. lawsoniana), top of the lesion | nwt | P2363 | 275 (6,546) |
aAccording to CCNV and allele ratio analyses, isolates were categorized into five groups. Details are in the main text
bNA1 clonal isolates subjected to a series of passage experiments were consolidated to highlight the generation of CCNVs. These isolates are also listed under NA1 isolates
cThe three EU1 isolates were obtained from the middle, bottom and top of a ca. 4 m long lesion on Chamaecyparis lawsoniana